BAC Information

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BAC

Clone NameMSMg01-070H17
Chromosome11 (Build37)
Map Location 54,381,866 - 54,382,456
singlet/doubletsinglet
Overlap geneRapgef6
Upstream geneKif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1
Downstream geneCdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2, Sparc, Atox1, G3bp, Glra1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070H17.T7 (MSMg01no070_h17.b1)MSMg01-070H17.TJ (MSMg01no070_h17.g1)
ACCAG294492AG294493
length698700
length of high quality
(start - end)
549 (36 - 584)591 (74 - 664)
definitionCHROMAT_FILE: MSMg01no070_h17.b1 PHD_FILE: MSMg01no070_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:34 2005CHROMAT_FILE: MSMg01no070_h17.g1 PHD_FILE: MSMg01no070_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTCT
GTGGACCAAGTTGGCCTCAAACTCAGAGATCCGCCTCCCTCTGCCTCCTT
AGTGCTGGGATTAAAGGTGTGCGCCACAACTACCTGGCTGACTCTAAAGG
TCCCTAACTATGCCCTGGGAGAGACTCTTCTCTCCAATTGCCAAAGAACT
CAAGTTGCAAAAACTCAAACCAGAACTCCATATTGTAAGATTGGCTGAAT
AACAAAACACTCACTTCCAGCCTCTGAGGGTCCTAATACAAACTGAGGAG
AGTTAGACCTCAGACTTGACCCTGCACTGTTTAAGAAATGCTTGTTTAAA
AATGACTATTAGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGATTGC
TCTTCTACACGTCCTGAGTTTAATTCCCAGCAACCACACGGTGGCTCACA
ACCATCTATAATGGGATCTGATGCCCTCTTCTGGTGTGTCTATCTGATGA
CAGCTACAGTGTGCTCATGTAAGTAAATATACCTTTAAAAAAATGACTAT
TGTGTGTGCATGACACCTCTGTGGGTACACGCACAGAGCAACAACTTTGG
AGAGCTGGGTCTCTGCTCCTGCCTTTATGTGGACTCAGTTGGTAGGCTTG
CACGTCAAGCACTGTAAATGTTTGCCCTTTTGGTATACACTTTATATT
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAAGATAATGAAGACAGTATTTTACA
AAGAGAAATTCCTGCCAGACAGTCTCGACGAAGGTTTCGGAAAATTAACT
ATAAAGGAGAACGCCAAACCATAATAGATGGAGTGGATATTAATAACTAC
CTTTCGGTGAGTATATGTCAGACTTTTTTATGGATCCTTGATTTTCACAT
AAAATGTCTTTAATTTAAGTGGTTTTTGGTCTCTACATGTAAAAGTTATG
GTAAAATAAACAGTTTTTAAAAACATTACTACTTGACTGTTGGATTAACT
AGAAATTTTCTTATCTGTGGGAATTTTGCTTTAGCTTTAGTTTTACTTAG
AGTAATTAACCAAAATAAGTATTTGTGGTAGCTTAGTACATAAATTTGTG
AATTTTCTTGCCTTTGTAGTGACTGAATTAGGATGTAAATTAAATCTGAG
AACTCAGGCAGTCAACTAATGGGAAAACTTAATATGATGGAAAAAATAAC
AAAAGAAAGAAAACCATGGCAGTTCTCCTTGGCCTGCAGGACTGTTAGTC
ACTCATAAAAACAGGCACTAGTGTAGAAATGTGTATTANAGTAAAGAAGC
AAATGAAACATTGAACTTTGTTAAAGCTAGAGAAAGGAAGCTGTTGCTTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_h17.g1 MSMg01no070_h17.g1 CHROMAT_FILE:
MSMg01no070_h17.g1 PHD_FILE: MSMg01no070_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:34 2005
         (591 letters)



>mm_chr11_54381666_54382656
          Length = 991

 Score = 1129 bits (584), Expect = 0.0
 Identities = 589/591 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagataatgaagacagtattttacaaagagaaattcctgccagacagtctcgacgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagataatgaagacagtattttacaaagagaaattcctgccagacagtctcgacgaag 260

                                                                       
Query: 61  gtttcggaaaattaactataaaggagaacgccaaaccataatagatggagtggatattaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttcggaaaattaactataaaggagaacgccaaaccataatagatggagtggatattaa 320

                                                                       
Query: 121 taactacctttcggtgagtatatgtcagacttttttatggatccttgattttcacataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taactacctttcggtgagtatatgtcagacttttttatggatccttgattttcacataaa 380

                                                                       
Query: 181 atgtctttaatttaagtggtttttggtctctacatgtaaaagttatggtaaaataaacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtctttaatttaagtggtttttggtctctacatgtaaaagttatggtaaaataaacag 440

                                                                       
Query: 241 tttttaaaaacattactacttgactgttggattaactagaaattttcttatctgtgggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttaaaaacattactacttgactgttggattaactagaaattttcttatctgtgggaa 500

                                                                       
Query: 301 ttttgctttagctttagttttacttagagtaattaaccaaaataagtatttgtggtagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttgctttagctttagttttacttagagtaattaaccaaaataagtatttgtggtagct 560

                                                                       
Query: 361 tagtacataaatttgtgaattttcttgcctttgtagtgactgaattaggatgtaaattaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagtacataaatttgtgaattttcttgcctttgtagtgactgaattaggatgtaaattaa 620

                                                                       
Query: 421 atctgagaactcaggcagtcaactaatgggaaaacttaatatgatggaaaaaataacaaa 480
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atctgagaactcaggcagtcgactaatgggaaaacttaatatgatggaaaaaataacaaa 680

                                                                       
Query: 481 agaaagaaaaccatggcagttctccttggcctgcaggactgttagtcactcataaaaaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaaagaaaaccatggcagttctccttggcctgcaggactgttagtcactcataaaaaca 740

                                                              
Query: 541 ggcactagtgtagaaatgtgtattanagtaaagaagcaaatgaaacattga 591
           ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 741 ggcactagtgtagaaatgtgtattaaagtaaagaagcaaatgaaacattga 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)