BAC Information

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BAC

Clone NameMSMg01-072K14
Chromosome11 (Build37)
Map Location 49,434,033 - 49,578,853
singlet/doubletdoublet
Overlap geneFlt4, LOC100040032, Scgb3a1, Cnot6, LOC666899
Upstream geneLOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380
Downstream geneLOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072K14.T7 (MSMg01no072_k14.b1)MSMg01-072K14.TJ (MSMg01no072_k14.g1)
ACCAG296150AG296151
length690701
length of high quality
(start - end)
413 (63 - 475)241 (71 - 311)
definitionCHROMAT_FILE: MSMg01no072_k14.b1 PHD_FILE: MSMg01no072_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:28 2005CHROMAT_FILE: MSMg01no072_k14.g1 PHD_FILE: MSMg01no072_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,578,636 - 49,578,853)(49,434,033 - 49,434,273)
sequence
AAATTTGCGGCGCTAAACGACTCCTATATCCAGAAATCCGCGGAATTCCA
ATTTCTTACACTCCAAATAATCCAACAGTGACATTTTTCTTTTGCATTTT
TAAAGTAAAATTATTTTTATTGTAACCAAACAACAACAACAAAGCAAGCA
AGAAACCCAAAATGCAGCAAGGAAGACATTCACCAGATAATTCAAAAAGA
TCTTTCTCAGAAAGTGACTTTGGAGGGGCCCTGATCCCTGGTGTCTATCC
TTGGCCCTGATCCCTGGTGTCTATCCTTGGCCTTGATCCCTGGTGTCTAT
CCTTGGCCCTGATCCCTGGTGTCTATCCTTGGCCTTGATCCCTGGTGTCT
ATCCTTGGCCTTGATCCCTGGTGTCTATCCTTGGCCTTGATCCCTGGTGT
CTATCCTTGGTCCTGATCCCTGGTGTCTATCCTTGGCCTTGATCCCTGGT
GTCTATCCTTGGCCTTGATCCCTGGAGTCTATCCTTGGTCCTGATCCCTG
GTGTCTATCCTTGGTCCTGATCCCTGGTGTCTATCCTTGGCCCTGATCCC
TGTTGGCTATCCTTGGCCCTGATCCCTGGCGTCTATCCTTGACCCTGATC
CCTGGTGGCTATCCCTGGTCTTGAACCCTGGATGCTATTCTTGTCCCTGA
TCCCTGATGTTCACCCCTGGCCCTGATCCTTGTGGTCTAC
TGATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGGACCTTTAGAAGAGAAAGCATAGGGA
AGGGAGAGCGAAAGGAACAGGCTGCGGTAGGCAGAGGAGAAGGAAGAAGA
TAAGGAAAGAGTGAGGTCACAGGAGCTTGCAAGCATCCTGGGTGCCAGTG
TATCTGTGGTGTGAGAGTGACTAATAGGGAGCTGCACTCCAGAGGGGCAC
AAGAGGGTCTGAGGGGCGCTTTGGCCACAGGTGAAATATAAAAGGAAACA
GTAGCCAGAAGCTAGTGTAGAATTGCTTTGTTGGATTTCTTGTATGAAGA
TGGGAGGTTTTCCCATAAAGACTGGCAATCAGAAGAGAAATGAATTGTGT
GAGATTTACGTCTAGGGCATTAGGGTTTGGGGCACAGAGGTGAGCTTGCT
CTGAGAGCATGTGTGGAGAAGCTGGTATGTTCTTCATTTGTAGGTTAGTA
AAGCCTCCCATCTCATGTCTTATTTGTGAACGCTGAAGGTTGAGGATGAA
GGAAAGAACATTCTGAGTCTTAGTAACGAGTACCATTCCGTCTGCTTGGT
TTATATCCCTTGGGACCTGACTAGTATTAATAGTTTTCCTGAACCAGCGT
TGATTTTCTCTGGAACGTGGCGTCTTGAAATGGATAATTCCCGGCTTAAT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_k14.b1 MSMg01no072_k14.b1 CHROMAT_FILE:
MSMg01no072_k14.b1 PHD_FILE: MSMg01no072_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:28 2005
         (413 letters)



>mm_chr11_49578436_49579248
          Length = 813

 Score =  422 bits (218), Expect = e-122
 Identities = 218/218 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaaataatccaacagtgacatttttcttttgcatttttaaagtaaaattatttttattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ccaaataatccaacagtgacatttttcttttgcatttttaaagtaaaattatttttattg 359

                                                                       
Query: 61  taaccaaacaacaacaacaaagcaagcaagaaacccaaaatgcagcaaggaagacattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 taaccaaacaacaacaacaaagcaagcaagaaacccaaaatgcagcaaggaagacattca 299

                                                                       
Query: 121 ccagataattcaaaaagatctttctcagaaagtgactttggaggggccctgatccctggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccagataattcaaaaagatctttctcagaaagtgactttggaggggccctgatccctggt 239

                                                 
Query: 181 gtctatccttggccctgatccctggtgtctatccttgg 218
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gtctatccttggccctgatccctggtgtctatccttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no072_k14.g1 MSMg01no072_k14.g1 CHROMAT_FILE:
MSMg01no072_k14.g1 PHD_FILE: MSMg01no072_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:28 2005
         (241 letters)



>mm_chr11_49433833_49434473
          Length = 641

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggacctttagaagagaaagcatagggaagggagagcgaaaggaacaggctgcggtag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tctggacctttagaagagaaagcatagggaagggagagcgaaaggaacaggcagcggtag 260

                                                                       
Query: 61  gcagaggagaaggaagaagataaggaaagagtgaggtcacaggagcttgcaagcatcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagaggagaaggaagaagataaggaaagagtgaggtcacaggagcttgcaagcatcctg 320

                                                                       
Query: 121 ggtgccagtgtatctgtggtgtgagagtgactaatagggagctgcactccagaggggcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgccagtgtatctgtggtgtgagagtgactaatagggagctgcactccagaggggcac 380

                                                                       
Query: 181 aagagggtctgaggggcgctttggccacaggtgaaatataaaaggaaacagtagccagaa 240
           ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 aagagggtctgaggggcactttggccacaggggaaatataaaaggaaacagtagccagaa 440

            
Query: 241 g 241
           |
Sbjct: 441 g 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)