BAC Information

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BAC

Clone NameMSMg01-072P19
Chromosome11 (Build37)
Map Location 27,797,684 - 27,798,331
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666270, LOC100042367, LOC100042377
Downstream geneEG626571, Ccdc85a, Efemp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072P19.T7 (MSMg01no072_p19.b1)MSMg01-072P19.TJ (MSMg01no072_p19.g1)
ACCAG296395AG296396
length1,693716
length of high quality
(start - end)		---647 (68 - 714)
definitionCHROMAT_FILE: MSMg01no072_p19.b1 PHD_FILE: MSMg01no072_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:55 2005CHROMAT_FILE: MSMg01no072_p19.g1 PHD_FILE: MSMg01no072_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:55 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTTGTTCTCTTTTTCTTCCCTCCCCTTCTCCCCGCNGAACGGCGCGCCGT
TGGCTTCTTCTCCGCAGTTATTTTTCTAGTGTTTGTGTCCTGTGCGTGTG
TCATTTCTCTTTCCGTTTTGTTCGCCGCTCACTCATATAACAAAGCGCGT
GTGTGAGCTTATNCGCCCCAAGAATATTCTCTTATCGTGCCATAATACAT
CGACATTTATCTAAATTACACGCATAAATAACATACTAACTCTCTGAGAC
GAAATATACCACCATTTCTGTTAAATGACGACCGAATAGCGGGCCCAAAT
CGTCGCGTATTCGCGTGGTGCGCGTATATACCACCTCTAATTGTACCCGT
GTCTTATCATCGTTCTACGCGCATCTCCTCGCGCTTAAGTCACCGCGTCA
TATATACTATATCCACCAAGATACGTTGACATGTTATTTGTGCCGAGCAT
TTATTGTTCCGCATTCATCCGGTGCGTCTTGCTCTTTCTGTTACGTCCTC
CGCTTACTTGTTATCTACTGATCTAGTCACGCAGACGACGAGGTAGGACT
ATGGAATAATCGCACACCACAAATCCTTGCGCGCTACAGAATAGCCCCCG
CATATATAATCCGCCTCATATAAATACGGGAATAATAACAGCGTCAGGTC
TGTAATATGTCGACGTGTTACCCGGCGCCGACACAGATCCGAGAATATCT
TAACATGCGCTGAATCGNGATGCGCAATATAAGAAACGAAACGAATTGTG
TTTCCTACCGCACATACCAACGCAATAACATACTGGATCATCGCTCGCAA
TTATTACAAGGACATGAGAGTACATGTACACCCGCGGCGGCGCGAACACA
CGTATCCGGTATAATCTTGCGTATTGCTGTGCCCGCGCGTCAGCGCATTA
GTATATNTATCTAGTACACGCGGCTGCGTGATTGCGACGGCACACGACGC
TGTGATCATAGTAAGACGCATAGCTCTTCNCACATCTCGTCGAGTGTAAC
ACCAATTGTGCGCCTGTAATATAAGTTCGCGTGTTACCATATTACGGTAT
GATCGCACGCACTAGTGCGTATAGCGACGATGGTCGCGCTTGTGTTATAT
CCGCGCGCATGTGCACGATGCATCANATATAACTCGCATGTGTCTATATT
ATTTCGTATCACCCCGCCTGACCACGCGATCGTTCGACATATACTCGACG
ACTTACATATGTAACTCACTTGTTGTGCATCATAGACTATATCTACCGCT
CTACACATATATCACACTAAATGTTCTTGGCATATAAACATAAGCATGCN
TACGACATGTGCTTATCGTCTGATACTGACTACTANCAGCAGACGATGGG
TTCAGCTGCGCTCTATTATACGTCATTCTCACATATATCATACACGCGTC
GCCTCGCCGCATATGTAATAACGCGTCGTCGGCACATTAACACTCGTGCT
TGCTATCTATTACTCGAATGATTCTATCGTCGCCATGATAAATTTCGCGC
GCACGTCCCTCTCTATCTAGTCGCGCTGTGTATATACTNGCGAGCGCGTA
CATCATGAGTACTGGGCGTCTACGGTAGATATATATCATGAGTATGCGAT
GNCATATCTCATATANATATATCTACCTCATCAGACTGATGCGCATGCTG
CATGACGACACATTGATGGTATATCGATGTCATATATGATATG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATATTTGCATACTAACGATCATATATTCTCAGG
TACTAGGACACACATATATCCAGAAGTAGAACTGCAATACTTTATTGGCA
GACTATAATAAAGATAAATATTTTACGGTAATATAAAAAGAAACATAATG
CTGTGAAGACTGAATGATTAAAAAATAAAATTTTCTAAAAATTTGATTGG
GGAGTTCTTTTATAATTTATATATTACGAAAGGACTTTACAAATTTTACT
TCATTAGATATCATAAAATTCAACTGTGATGTTCTGTAAAAGAAGCTTGT
TTTAAACGGAAATATTTTAGATAATATATACAGGCAATACACACTCTCCG
TTCCTTCCTTTATATGGCATGACTATAATGAGTCCTAAAGAAATAATGTA
TTGAGTAGCAAATTATCTTAATAGCAGGATAAAGATGTTTTTCAGCAAAA
TGCAATGTTGTATTATAATAGTAACAAATATAGCCACAGGGAAGCATCAA
ATATTATTAATTTACATGAATTTATTATAATAATATTCTTGTCTGTGCTT
GAGGAAAGCAGAACTTTAATGAGATTAACTATTGCAAGTAGACATAACAT
TCTTAATTCCTCANAAAAATTTAAGGGACTTTCCCTATTCATTTTTCCCC
TTTCTTGACTCTGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_p19.g1 MSMg01no072_p19.g1 CHROMAT_FILE:
MSMg01no072_p19.g1 PHD_FILE: MSMg01no072_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:55 2005
         (647 letters)



>mm_chr11_27797473_27798519
          Length = 1047

 Score = 1187 bits (614), Expect = 0.0
 Identities = 640/649 (98%), Gaps = 3/649 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatttgcatactaacgatcatatattctcaggtactaggacacacatatatccagaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 atatttgcatactaacgatcatatattctcaggtactaggacacacatatatccagaagt 800

                                                                       
Query: 61  agaactgcaatactttattggcagactataataaagataaatattttacggtaatataaa 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 799 agaactgcaatactctattggcagactataataaagataaatattttacggcaatataaa 740

                                                                       
Query: 121 aagaaacataatgctgtgaagactgaatgatt-aaaaaataaaattttctaaaaatttga 179
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 739 aagaaacataatgctgtgaagactgaatgattaaaaaaataaaattttctaaaaattcga 680

                                                                       
Query: 180 ttggggagttcttttataatttatatattacgaaaggactttacaaattttacttcatta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttggggagttcttttataatttatatattacgaaaggactttacaaattttacttcatta 620

                                                                       
Query: 240 gatatcataaaattcaactgtgatgttctgtaaaagaagcttgttttaaacggaaatatt 299
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 619 gatatcataaaattcaactgtgatattctgtaaaagaagcttgttttaaacggaaatatt 560

                                                                       
Query: 300 ttagataatatatacaggcaatacacactctccgttccttcctttatatggcatgactat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttagataatatatacaggcaatacacactctccgttccttcctttatatggcatgactat 500

                                                                       
Query: 360 aatgagtcctaaagaaataatgtattgagtagcaaattatcttaatagcaggataaagat 419
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aatgagtcctaaagaagtaatgtattgagtagcaaattatcttaatagcaggataaagat 440

                                                                       
Query: 420 gtttttcagcaaaatgcaatgttgtattataatagtaacaaatatagccacagggaagca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gtttttcagcaaaatgcaatgttgtattataatagtaacaaatatagccacagggaagca 380

                                                                       
Query: 480 tcaaatattattaatttacatgaatttattataataatattcttgtctgtgcttgaggaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tcaaatattattaatttacatgaatttattataataatattcttgtctgtgcttgaggaa 320

                                                                       
Query: 540 agcagaactttaatgagattaactattgcaagtagacataaca-ttcttaattcctcana 598
           ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
Sbjct: 319 agcagaactttaatgagattaactattgcaagtagacataacatttc-taattcctcaaa 261

                                                            
Query: 599 aaaatttaagggactttccctattcatttttcccctttcttgactctgt 647
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaaatttaagggactttccctattcatttttcccctttcttgactctgt 212


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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