BAC Information

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BAC

Clone NameMSMg01-073N12
Chromosome11 (Build37)
Map Location 67,176,327 - 67,176,483
singlet/doubletsinglet
Overlap geneMyh13
Upstream geneGm879, LOC668323, A530088H08Rik, 9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8
Downstream geneGas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8, Ntn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073N12.T7 (MSMg01no073_n12.b1)MSMg01-073N12.TJ (MSMg01no073_n12.g1)
ACCAG297043AG297044
length715752
length of high quality
(start - end)
---161 (133 - 293)
definitionCHROMAT_FILE: MSMg01no073_n12.b1 PHD_FILE: MSMg01no073_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:02 2005CHROMAT_FILE: MSMg01no073_n12.g1 PHD_FILE: MSMg01no073_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGTTGTGGGGGTTTCCCCGTCGTTGCTTCCTATGGGTCTTTCTCCTTCC
CCTCCCCCCTTTGCGCTTCTTCCCCCCTCCGCCCGCCGGGCCCGCGGTTC
CTCCCCGGGCCCTCTTTCCAGTTTATGCTTCTACTGGTCCCGTCCGTTCT
TCAGTTTATCTCCGCTCTGTCCCGCCTCATCGTCTCCTAAATCCCTCGCT
AAAGTCTCAACAAGAGTGACTACAGATAGCCCACCCGTTCGGTTAACGAA
TCCGCATTTAGTTGTTCTCTCTGCGCGGGGCTCCTCATTTTTTCTTAAGC
TACCCCCCCGAGCCCAACCGACTCCTTTATGATGAAGTTGTTCGGCTAGA
CGTGTACAATACCTTATCTATCCAAGCCGTAGTACATACACGGGCGGCCC
CCTAGATTGCGGTTACTTCACGATCGGATATAGAGTGAGAGACACATAGT
TGAAGTGGACAATGCACTAGGACTAATATTTCGTGTAGGGGCAGACGATT
CGCTGCGAAGATCCCCTGGGGGTAATGGACTACCGCACTACTACACTACC
GCGCATACCCCTAACCCTCTCTCAGATGAGTGGTAATTACGACTGTGTTG
TATCACCCCCTTCGCGCGTCTGTTCCAACTACTACCATTATCCGCCGAAA
AAAGACCAACGTATTAAAAAACCGGGCGCGATGTGCGTGAACACGAGAGG
CGGCGCCCAATTATG
CCCTTTTTTTTTTTTTTTTCTTTTTTTTTCTTCCTCTTTTCCCTCTCCAT
TCNTTTTTTCGATGATATGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATGACCTTACGTACA
CACATCATGAAGGACCAGAAAACTCACACTCTGAGTCTTTCACAATCAGC
AGAGACTTAGGGGAACCTGGATGCTGTCTAATTTTATCGATCAGAAGCCT
GAAGTTATTAAGAGCTCTAGTAATGTGCTCAAGGACGCATGGTCACTTGA
AGACTAGAATCCCTGAAGTCTCTTTTATTGCAAGAGCAGTTCACTATGTA
GCTCCAGTCCTCACGAGAAGAATCAGGGGTCATTGCATGAAGAGGGTCTG
AGCCTTAGGGAACACGATTAAATTCGACCTTTGATGGATGAGAATGTTAT
AAGGTCACGGAAAGCTGTGTCCACTCGGTTTTGGAGTTGGCATGATATAG
TAGAGCAGTATAACCCAGCTATGCCCCAGAGGTAGCTCACCTTGCAGGTT
TCTTATTCTCCCGTCTCTGTGTCTCTAACTGATTCATCACCTCTTCATAG
GCATCTCCTCATCTTGAAGATCTCTGCCACTGACATACCTGTCATCTTTC
TGCGTTTCTTCCTGCTTATTTTGTTCCCCACCCTGCTTTCGTTTCCTTTC
TTGCATGACCTGTTTTGTAGTGATGGCCTTCTTGCCCCCCCTTACCACAT
GC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_n12.g1 MSMg01no073_n12.g1 CHROMAT_FILE:
MSMg01no073_n12.g1 PHD_FILE: MSMg01no073_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:02 2005
         (161 letters)



>mm_chr11_67176127_67176687
          Length = 561

 Score =  296 bits (153), Expect = 5e-85
 Identities = 156/157 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatgaccttacgtacacacatcatgaaggaccagaaaactcacactctgagtctttca 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 357 tttatgaccttacgtacacacatcatgaaggaccagaaaactcagactctgagtctttca 298

                                                                       
Query: 61  caatcagcagagacttaggggaacctggatgctgtctaattttatcgatcagaagcctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 caatcagcagagacttaggggaacctggatgctgtctaattttatcgatcagaagcctga 238

                                                
Query: 121 agttattaagagctctagtaatgtgctcaaggacgca 157
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 agttattaagagctctagtaatgtgctcaaggacgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space:    84609
Effective search space used:    84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)