Query= MSMg01no075_d13.b1 MSMg01no075_d13.b1 CHROMAT_FILE:
MSMg01no075_d13.b1 PHD_FILE: MSMg01no075_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:50 2005
(628 letters)
>mm_chr11_61904869_61905896
Length = 1028
Score = 1094 bits (566), Expect = 0.0
Identities = 608/622 (97%)
Strand = Plus / Plus
Query: 7 gaattccacaactcacgagacagcagcactgaacatcaagagcgttaattaatttgataa 66
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattccacaactcaggagacagcggcactgaacatcaagagcgttaattaatttgataa 266
Query: 67 aatcagtcttttaaaaactacattcaaggggctggagagatggctcagtgcattgaccgc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aatcagtcttttaaaaactacattcaaggggctggagagatggctcagtgcattgaccgc 326
Query: 127 tcttgttggaggagtcggattgggtttgcagcaccgagattgcagcttccagttgtctgt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tcttgttggaggagtcggattgggtttgcagcaccgagattgcagcttccagttgtctgt 386
Query: 187 aacttcagctccaggtgatctgatgcacgtggcacacttatatacatgcagtcaaaaaac 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aacttcagctccaggtgatctgatgcacgtggcacacttatatacatgcagtcaaaaaac 446
Query: 247 tcatacacataaagtaagtcttataaaaggtttcattcagcctctttaacttctatggat 306
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcatacacataaaataagtcttataaaaggtttcattcagcctctttaacttctatggat 506
Query: 307 gggcaaattcctgtgaatcctccagtacataagcactttcttcttactggtcaatagcgt 366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 507 gggcaaattcctgtgaatcctccagtacataagcactttcttcttactggtcaatagcat 566
Query: 367 atttatgcaccgttgttattattctaggaatcttatcctgacttccttattgactgaagg 426
||||||| | |||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 567 atttatggattgttgttattattcttggattcttatcctgacttccttattgactgaagg 626
Query: 427 gtcttggacataattttttgatttatttttctcctccttatatgagtttctagaacaatg 486
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 627 gtcttggacataatttcttgatttatttttctcctccttatatgagtttctaaaacaatg 686
Query: 487 taacttagcatattctcaacagatatttgattaatagtaaatgttgaagttgcaaatatg 546
||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 687 taagttagtatattctcaacagatatttgattactagtaaatgttgaagttgcaaatatg 746
Query: 547 ttcacacattctttttctcttgtctctactttcccatgatttccatcatttcagttattt 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ttcacacattctttttctcttgtctctactttcccatgatttccatcatttcagttattt 806
Query: 607 tctttgatatgtgacactccat 628
||||||||||||||||||||||
Sbjct: 807 tctttgatatgtgacactccat 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no075_d13.g1 MSMg01no075_d13.g1 CHROMAT_FILE:
MSMg01no075_d13.g1 PHD_FILE: MSMg01no075_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:50 2005
(597 letters)
>mm_chr11_62035311_62036307
Length = 997
Score = 988 bits (511), Expect = 0.0
Identities = 535/547 (97%), Gaps = 8/547 (1%)
Strand = Plus / Minus
Query: 1 tggatgccctacaaaagctgaggagcaactggatgaagaatgagaactaaggacaaactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tggatgccctacaaaagctgaggagcaactggatgaagaatgagaactaaggacaaactc 484
Query: 61 ggatgctaaagtgagaagggactgaggagagggccgttcctcggaccctgtccctgtggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 483 ggatgctaaagtgagaagggactgaggagagggccgttcctcggaccctgtccctgtcgg 424
Query: 121 tgtggcctcagcactgtcacctgtcatcagctcagacaccactcagcacagaaaaccacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgtggcctcagcactgtcacctgtcatcagctcagacaccactcagcacagaaaaccacg 364
Query: 181 ggcttccccacatggtttaacttctcaaggtcttgcattctgcaggtctctcttgtgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ggcttccccacatggtttaacttctcaaggtcttgcattctgcaggtctctcttgtgctt 304
Query: 241 atatgagggcagaggggaaacacacggccatggaggcttttgacagcctccaaatgatag 300
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 303 agctgagggcagaggggaaacacacggccatggaggcttttgacaacctccaaatgatag 244
Query: 301 ttagtaaagaagcacaagacaaacaaaaccacagcaaaaccaccccc----taccaaagc 356
|||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 243 ttagtaaagaagcacaagacaaacaaaaccacagcaaaacca----caaagtaccaaagc 188
Query: 357 cgggcatggtgtctaatctcagcacctgggaggcagaggcaggaagatcaggcattcaag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 cgggcatggtgtctaatctcagcacctgggaggcagaggcaggaagatcaggcattcaag 128
Query: 417 accagccatgagattctgtttcataaaatccccaacgcaaagcaaacaaataaacaaaca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 accagccatgagattctgtttcataaaatccccaacgcaaagcaaacaaataaacaaaca 68
Query: 477 aacccacccccaaacaccccaataaaaccggagaaaatgtaaggcaccggctgtgctggt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 aacccacccccaaacaccccaataaaaccggagaaaatgtaaggcaccggctgtgctggt 8
Query: 537 attctta 543
|||||||
Sbjct: 7 attctta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
