BAC Information

Click to search

BAC

Clone NameMSMg01-075P06
Chromosome11 (Build37)
Map Location 55,321,868 - 55,322,196
singlet/doubletsinglet
Overlap genenone
Upstream geneFnip1, Rapgef6, Cdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2, Sparc, Atox1, G3bp
Downstream geneGlra1, Nmur2, LOC100040816, LOC624168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075P06.T7 (MSMg01no075_p06.b1)MSMg01-075P06.TJ (MSMg01no075_p06.g1)
ACCAG298646AG298647
length677743
length of high quality
(start - end)
224 (87 - 310)363 (147 - 509)
definitionCHROMAT_FILE: MSMg01no075_p06.b1 PHD_FILE: MSMg01no075_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:45 2005CHROMAT_FILE: MSMg01no075_p06.g1 PHD_FILE: MSMg01no075_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTTNNNTTCAAAATTTGGGCGCTAAACGATCCTATTTCTGACCGGCGC
GGAANCNNTGTTAGCTACACCAAGANTTTTAAGGGGGTATTTGAATTTCT
GGAGTTCAGCTTTTTGACCTCTTTGTATATATTGGATATTAGCCCCCTAT
CTGATTTAGGATTAGTAAAAATTATTTCCCAATCTGTTGGTGGCCTTTTT
GTCTTATTAACAGTATCTTTTGCCCTACAGAAGCTTTGCAATTTTATTTT
GTCCCATTTGTCGATTCGTGATCTTACAGCACAGGCCATTGCTGTTCTGA
TTAGGAAATTTTTTCATTATTCATACCATCAAGGATCTTCCCCACTTTCT
CCTCTATTTTTTCCCCCGCCCCTGCCTATATGTGGAGTTCTTTAATCCAC
TTATACTTGAGCTATGTACAAGGAGATAACAATGGATCTATTAGCATTCT
ACTACTTGATAACTGTCTGTTGTACCACCACCATTCTCTGAAAATGCTGT
CTCTTTTTCCACCGGCATGGATTTAGCTCCTTTGTCAAAGATCAAGTGAT
CACAATGCGCCGTGGCCCCATCTCCGGCCCCTTCAATCCTAACCCCACTG
ATTTATCTGTCCGTCCAGCCGTCACACCCCCCCGCACCATCTTATCTATT
CTTTTTCCCTCCTTCTTCGACCCCAGA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCC
CCCCNCCCCCCCCTCCCCCCNNCCAGATGAAGTGCGTXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTG
GCCCACTAAGGCCAAGTTGCTTTGTCCAGACCGAAACGTTCAAAGGCAAG
TATGTATTTTTCCTTTGGAGGCCCACTGAGCCAGGCTTGGTCTTCACTAG
AATCCAGTTAGAATGAAACTGCCCTTCCTACACAGAAGGGGTGGTCTGGG
GGCTCTCAGGACAGAAGCTAACATGTTCCTACGTCTATGGTTTGTGGGCC
TGTTTTGTCAACACCCTGGCTTTGGGGTGCAGCTGAAGGGCCACAGCTGA
GGCTGCATCTGTCTAGTTTTGGGGGTTTTTGTTTTGTGGTAACGGCGAGC
AGGCTGTCTAGATGCTTTCTTTTGTAATCCCTTTCCCTCTTCCTTTTCTA
AATCTGGGGTGAAAGTGAAGAGTTACTGGACATCCCTTCTTTACTGGACC
GTTGGCCAGTATTTCAATCCCAGGACAGCTCTTATTGGAAGACTTTTTCT
TCCCCTCTCAAACCCCTGCCTGAGAACCACCAGCACCTGACTACCTGGGA
CTAAACCATTTAACTGCTTAACCGGTGGGCGCAGACCCTCATAAAGCTAC
ACGCTTGACAAGGCACCTACCCTCCAGCATTTGAATCTCCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_p06.g1 MSMg01no075_p06.g1 CHROMAT_FILE:
MSMg01no075_p06.g1 PHD_FILE: MSMg01no075_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:45 2005
         (363 letters)



>mm_chr11_55321668_55322430
          Length = 763

 Score =  543 bits (281), Expect = e-159
 Identities = 326/363 (89%), Gaps = 34/363 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggcccactaaggccaagttgctttgtccagaccgaaacgttcaaaggcaagtatgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggcccactaaggccaagttgctttgtccagaccgaaacgttcaaaggcaagtatgta 260

                                                                       
Query: 61  tttttcctttggaggcccactgagccaggcttggtcttcactagaatccagttagaatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttcctttggaggcccactgagccaggcttggtcttcactagaatccagttagaatga 320

                                                                       
Query: 121 aactgcccttcctacacagaaggggtggtctgggggctctcaggacagaagctaacatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactgcccttcctacacagaaggggtggtctgggggctctcaggacagaagctaacatgt 380

                                                                       
Query: 181 tcctacgtctatggtttgtgggcctgttttgtcaacaccctggctttggggtgcagctga 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 381 tcctacatctatggtttgtgggcctgttttgtcaacaccctggctttggggtgcag---- 436

                                                                       
Query: 241 agggccacagctgaggctgcatctgtctagttttgggggtttttgttttgtggtaacggc 300
                                         |||||||||||||||||||||||||| || 
Sbjct: 437 ------------------------------ttttgggggtttttgttttgtggtaagggg 466

                                                                       
Query: 301 gagcaggctgtctagatgctttcttttgtaatccctttccctcttccttttctaaatctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gagcaggctgtctagatgctttcttttgtaatccctttccctcttccttttctaaatctg 526

              
Query: 361 ggg 363
           |||
Sbjct: 527 ggg 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)