BAC Information

Click to search

BAC

Clone NameMSMg01-075P11
Chromosome11 (Build37)
Map Location 62,064,490 - 62,064,718
singlet/doubletsinglet
Overlap geneAdora2b
Upstream geneAldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1
Downstream gene2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22, LOC433423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075P11.T7 (MSMg01no075_p11.b1)MSMg01-075P11.TJ (MSMg01no075_p11.g1)
ACCAG298656AG298657
length756683
length of high quality
(start - end)
---239 (74 - 312)
definitionCHROMAT_FILE: MSMg01no075_p11.b1 PHD_FILE: MSMg01no075_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:46 2005CHROMAT_FILE: MSMg01no075_p11.g1 PHD_FILE: MSMg01no075_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATATTTGTGTGTGTTATTTGATCTTTATTTCGAGAGGATCCGTGGTGTT
CCTGGATTGCCTTGTTCTATTCTGAGTATCCTTGTCTCGATTAATTATTG
TAGTTAATCTTATTTTATAGATTGTTCTTGTGTGTTTCTTCTTGTATCAT
TCTTGAGTATGACTTTCCTGCCTCTCCTCTACCACTCTTTGTATGCCTTC
TGTTGTATACTCATGCCCCATATCTTACTCTACTCTCGCTTGTTATCATT
AGCTCACTATATATTTCACCTCACTTCTCACTGCCCCTGAGGTTGACATA
TCTCCATATTCTTTATTGCCTACACCCCTTCACTCAATTTTATCTTGTCT
CATGCCTTGTCATCACTTTATCTTCTCACGATCTGATCCCTCCACCCACT
CAAACTAGATATATGTACAATTTTGTTAACTTCTATTGATACCTGTTCCC
CCCCCCCTGTTTATATTTGCTTTGTATTTTTCGCTATTATATTCTCGCAC
ATACCCTATCCATATTTCAAGCTCTATTCTACTACTTCCCTGTCTCCTCT
GTTCCTCTTTCTATTGTCCCGCTCAATTGCACTTCTGTTGCTGACCATCT
CACACACAACTACTTGCCTTATGAAAAATACTATCCTCTCCACCCCTTCC
CACCACTCCCTCTCATATCTCATTCTCTACTTCTACTTCTCTTGTTGTCT
CTTACCTTTCACTTATACTCCTTTTCATTCTCCTGATGCCTTTTCAACCT
CACAAT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATTTCCTTCGTTCTTGTGGTTCTGCA
CTTGTCTGTTGCCCTCCCATTGGTGCTTGGTGGCCGTTTGAACTCTTTCC
ATAGAGCAGTCACATGCCCCCCCCCCACACCCCCTGCTTGAGTTGCCACA
TCTAGGGGAAGCCCTTTGGGCTTGCCCCTGGAAGAGCCCCAGATACACTG
AGGCCTAATACCCAGGACCGGCTCCAAGTAGCTCTTGTGTCACGTGACTC
GAGCAGGAAGTTCCATATTTTGTTTAAATCTGTTAGTTCTTGTCCTGGGG
TTTGCTGGTCGTGCCTTGAAGAAAGTGGGTGTGGGTGTCTTAAGGGGAAA
CAGATGTGTATTCCCCCCCCCCCCACTTCTCCTTTGCGTTTGCTAAGGGT
GAGGGGCCAGTCGCACGTGAAGGGAGGGAAAACAGCGTGCAGTCCGGTGT
GCCCGTTCCCACCCCCCGGGCCTGTGCTCGTTGTTCTGATATTGAGCCTG
CATTCTCCCCTTTCCCCCCCAGCACTGTATGACTGTCTATCCTGTCCATA
CCACTGTGTTATATTGGAGAACGTATTGTATTTCTACTCTTTTTTCTTAT
CCTCCTGTAAATAGTTTGTGTGTTCTGGTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_p11.g1 MSMg01no075_p11.g1 CHROMAT_FILE:
MSMg01no075_p11.g1 PHD_FILE: MSMg01no075_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:46 2005
         (239 letters)



>mm_chr11_62064290_62064929
          Length = 640

 Score =  366 bits (189), Expect = e-106
 Identities = 222/239 (92%), Gaps = 10/239 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttccttcgttcttgtggttctgcacttgtctgttgccctcccattggtgcttggtgg 60
           ||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct: 201 catttccttcgttcttgtggttctgcacttgtctgttgcccgctcactggtgcttggtgg 260

                                                                       
Query: 61  ccgtttgaactctttccatagagcagtcacatgccccccccccacaccccctgcttgagt 120
           ||||||||||||||||||||||||| ||||||||||||| |||          |||||||
Sbjct: 261 ccgtttgaactctttccatagagcaatcacatgccccccgccc----------cttgagt 310

                                                                       
Query: 121 tgccacatctaggggaagccctttgggcttgcccctggaagagccccagatacactgagg 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 311 tgccccatctaggggaagccctttgggcttgcccctggaagagccccagatacacagagg 370

                                                                      
Query: 181 cctaatacccaggaccggctccaagtagctcttgtgtcacgtgactcgagcaggaagtt 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cctaatacccaggaccggctccaagtagctcttgtgtcacgtgactcgagcaggaagtt 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 640
Length adjustment: 9
Effective length of query: 230
Effective length of database: 631
Effective search space:   145130
Effective search space used:   145130
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)