Query= MSMg01no076_g10.b1 MSMg01no076_g10.b1 CHROMAT_FILE:
MSMg01no076_g10.b1 PHD_FILE: MSMg01no076_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:21 2005
(480 letters)
>mm_chr11_51694731_51695610
Length = 880
Score = 857 bits (443), Expect = 0.0
Identities = 467/475 (98%), Gaps = 1/475 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttccatgaggcaccttcttcacaggtaactatagtttgtgtcaagtagatgaa 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ggaattcttccatgaggctccttcttcacaggtaactatagtttgtgtcaagtagatgaa 643
Query: 64 aattagccaacacaggtagaaagatcagaagttcaaggtcatcttgggctagctatataa 123
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 642 aattagccaacacaggtagaaagatcagaagttc-aggtcatcttgggctagctatataa 584
Query: 124 tgagttccaagacaggctgggttacgtgagatctagtattaaaaacaaaacaaaaaagta 183
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 583 tgagttccaagacaggctgggttatgtgagatctagtattaaaaacaaaacaaaaaagta 524
Query: 184 aaaactgttattagcttatgggttaaataaataccccagagtgggccaaatgtggccttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aaaactgttattagcttatgggttaaataaataccccagagtgggccaaatgtggccttt 464
Query: 244 ggggcatagtttgtcctttctctagtctagaatgttctgtcctagggattagagtgccag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ggggcatagtttgtcctttctctagtctagaatgttctgtcctagggattagagtgccag 404
Query: 304 tcaccgcagcccataagtcatgggtagtgatagagtggccagcggctgcggttggccctg 363
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 403 tcaccgcagcccataaaccatgggtagtgatagagtggccagtggctgcggttggccctg 344
Query: 364 gaccgatgacttcctaggatctgggatattaggtgttaaagccagggcagtcccaggcaa 423
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gacagatgacttcctaggatctgggatattaggtgttaaagccagggcagtcccaggcaa 284
Query: 424 agcagacagctggtcaccctatttggcaactattaacccagagggaccaggcttc 478
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 283 agcagacagctggtccccctatttggcaactattaacccagagggaccaggcttc 229
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no076_g10.g1 MSMg01no076_g10.g1 CHROMAT_FILE:
MSMg01no076_g10.g1 PHD_FILE: MSMg01no076_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:22 2005
(479 letters)
>mm_chr11_51539889_51540770
Length = 882
Score = 901 bits (466), Expect = 0.0
Identities = 477/482 (98%), Gaps = 3/482 (0%)
Strand = Plus / Plus
Query: 1 ttcaggaactggtgcaaaacaaaaaatgattaaaaaaaggattaattcaataacttacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcaggaactggtgcaaaacaaaaaatgattaaaaaaaggattaattcaataacttacat 260
Query: 61 tttgatttttattaatttaggtgttgtaattaatttaaacctggttaaaaataaaggaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgatttttattaatttaggtgttgtaattaatttaaacctggttaaaaataaaggaac 320
Query: 121 aaattgaatttttaaaagggttctatttaaactcctcctataatatacggcagcaagagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattgaatttttaaaagggttctatttaaactcctcctataatatacggcagcaagagg 380
Query: 181 ctttgaagacaactgcaatcactgtgacgttcccagcacccagtgtcctggctaaatcct 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttgcagacaactgcaatcactgtgacgttcccagcacccagtgtcctggctaaatcct 440
Query: 241 tacggctcatttccaaataagcttgaaaagatgattaaaaactcaacaaatgccagttgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacggctcatttccaaataagcttgaaaagatgattaaaaactcaacaaatgccagttgt 500
Query: 301 ttttcagaaatctcccaactgtacagaagttgacctttgacccacaaggctgctcccaga 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 ttttcagaaatctcccaactgtacagaagttgacctttgacccagaaggctgctcccaga 560
Query: 361 cagtcaaggtgcaactgtttcaaggtaaagccatgagggatcagcaa---gctttattag 417
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 cagtcaaggtgcaactgtttcaaggtaaagccatgagggatcagcaacaagctttattag 620
Query: 418 caccaattgcttttgtacaacaccaagtgcctcagtgaattgaacctgtaattcactatg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caccaattgcttttgtacaacaccaagtgcctcagtgaattgaacctgtaattcactatg 680
Query: 478 ct 479
||
Sbjct: 681 ct 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 882
Length adjustment: 10
Effective length of query: 469
Effective length of database: 872
Effective search space: 408968
Effective search space used: 408968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
