BAC Information

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BAC

Clone NameMSMg01-076H16
Chromosome11 (Build37)
Map Location 111,613,214 - 111,732,245
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041523, Kcnj16, Kcnj2, LOC667003, LOC100041539, LOC100041559, EG629966, LOC629967
Downstream geneLOC100041589, LOC100043020, EG668396, EG667038, LOC100041610, LOC671963, LOC667047, BC006965, Sox9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076H16.T7 (MSMg01no076_h16.b1)MSMg01-076H16.TJ (MSMg01no076_h16.g1)
ACCAG299047AG299048
length695700
length of high quality
(start - end)
455 (66 - 520)339 (76 - 414)
definitionCHROMAT_FILE: MSMg01no076_h16.b1 PHD_FILE: MSMg01no076_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:28 2005CHROMAT_FILE: MSMg01no076_h16.g1 PHD_FILE: MSMg01no076_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,731,793 - 111,732,245)(111,613,214 - 111,613,554)
sequence
CCTCATAAXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAGATCCGCGGA
ATTCGTACCCACCAGCCACACAATAGAAAGAGAGATGCAACTCCTGTAAG
CTGTCACATTTCTCCTACGTAGCTCTTTGGCACACACTCCACTCTTCACA
TGTAATAAGTCTTTAAAATTATAGTTTGGGACTTGGAGAAATTAATATGA
AAGTGGGAAAAGCAAATGACCCATTAGTGGTTACAATTTGGAGTTAGGGA
AAATCAAAATATAAAATATAAAAAGAAAAGCATTTTGTAAATGTCAGCTG
ATTTATATCTCCATAGTAAGGTACTTACATAGCATGCAATCCACAGCAGG
TCCCAGCAAGCTCAAACCCCCAGTATTATATAAACAAATAAATAAAAAAA
AAAATCACAAAAGGACAGCTAGCCAAAGGATACCAAAATAGCTCTTTGGA
AGAGATACTTCCACATTTGAACTCAAACCCTTGTAAAAGTGAATTGGATA
GAAAATCTGGAAGAAGGTTCCAGAAAGAATCAATGCTAATACAATACACA
GACTGAGGTGATTCCTGAAACCTGTGCGTGGTACATTCAGTACATTTTAT
TCATTTGAATAGCTAGAATACTTGATTGCTTACTGTTTAGGAGAATCAGG
TGGCGTCTTGTGTGTTGATCGATGTCCTATGCTAGACAGATGTAC
TTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCCCCCCATTATCTAGGAACATGC
TGCCAACCCAGTGCTAGGGAGGTAGAGACAGGGTAGCCCCTGGGGTTCAC
TGGCTAGCTAGTCTAGATGAGCTCCAGGTTCAGTGGGAGAGGAAATATGG
CAGACATGTCTCTGGCCTCTGTAATCATCAGCATACGTGTCAACACAAGC
AAGGCAGGTGGTGGGCTTCTTCCTAAGTGTTGTGTCAATATACAAGAAGT
GACACCTGCTTTACCACTCGTAAGGTACCCGTAGGCCAGTCACAGTGCTT
CTTGCTCAGTTGGCTTATGCTGACCATCCAGCACCACAGACCCCAAGAGT
AGAGAGTGGCATGTATCGACGGCACCAATTGTCTTTGATGCTTTTATTGG
AAGTAAGTAAATCAGGGACGCTCATGGATCCTGCACTCGGCAGGATAAGG
TACCAGGATGACCTAGCGTTTAACAACCAGCTTAGACTTTAACTTGCCCT
ATAATGTGAGACTCTGTCTTTACAGAACGAATATAATATTAACTATAAAA
CAAAATGAGGCGATACAGCTTATGTTTTCAGAGAAGGAAACTGCTGGAAC
TGGTGCTCCAGATCAGGAGCTAAATGCTTTTAACCAGGAACCACAGTACG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_h16.b1 MSMg01no076_h16.b1 CHROMAT_FILE:
MSMg01no076_h16.b1 PHD_FILE: MSMg01no076_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:28 2005
         (455 letters)



>mm_chr11_111731738_111732592
          Length = 855

 Score =  830 bits (429), Expect = 0.0
 Identities = 448/455 (98%), Gaps = 2/455 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacacaatagaaagagagatgcaactcctgtaagctgtcacatttctcctacgtagctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ccacacaatagaaagagagatgcaactcctgtaagctgtcacatttctcctacgtagctc 449

                                                                       
Query: 61  tttggcacacactccactcttcacatgtaataagtctttaaaattatagtttgggacttg 120
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 448 tttggcacacactccactcttcacatgtaataagtctttaaaattgcagtttgggacttg 389

                                                                       
Query: 121 gagaaattaatatgaaagtgggaaaagcaaatgacccattagtggttacaatttggagtt 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gagaaattcatatgaaagtgggaaaagcaaatgacccattagtggttacaatttggagtt 329

                                                                       
Query: 181 agggaaaatcaaaatataaaatataaaaagaaaagcattttgtaaatgtcagctgattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agggaaaatcaaaatataaaatataaaaagaaaagcattttgtaaatgtcagctgattta 269

                                                                       
Query: 241 tatctccatagtaaggtacttacatagcatgcaatccacagcaggtcccagcaagctcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tatctccatagtaaggtacttacatagcatgcaatccacagcaggtcccagcaagctcaa 209

                                                                       
Query: 301 acccccagtattatataaacaaataaataaaaaaaaaaatcacaaaaggacagctagcca 360
           ||||||||||||||||||||||||||||  |||||||||||||||||||| || ||||||
Sbjct: 208 acccccagtattatataaacaaataaat--aaaaaaaaatcacaaaaggaaagttagcca 151

                                                                       
Query: 361 aaggataccaaaatagctctttggaagagatacttccacatttgaactcaaacccttgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 aaggataccaaaatagctctttggaagagatacttccacatttgaactcaaacccttgta 91

                                              
Query: 421 aaagtgaattggatagaaaatctggaagaaggttc 455
           |||||||||||||||||||||||||||||||||||
Sbjct: 90  aaagtgaattggatagaaaatctggaagaaggttc 56


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no076_h16.g1 MSMg01no076_h16.g1 CHROMAT_FILE:
MSMg01no076_h16.g1 PHD_FILE: MSMg01no076_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:28 2005
         (339 letters)



>mm_chr11_111613014_111613754
          Length = 741

 Score =  617 bits (319), Expect = 0.0
 Identities = 335/341 (98%), Gaps = 2/341 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccccccattatctaggaacatgctgccaacccagtgctagggaggtagagacagggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agccccccattatctaggaacatgctgccaacccagtgctagggaggtagagacagggta 260

                                                                       
Query: 61  gcccctggggttcactggctagctagtctagatgagctccaggttcagtgggagaggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcccctggggttcactggctagctagtctagatgagctccaggttcagtgggagaggaaa 320

                                                                       
Query: 121 tatggcagacatgtctctggcctctgtaatcatcagcatacgtgtcaacacaagcaaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatggcagacatgtctctggcctctgtaatcatcagcatacgtgtcaacacaagcaaggc 380

                                                                       
Query: 181 aggtggtgggcttcttcctaagtgttgt--gtcaatatacaagaagtgacacctgcttta 238
           ||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||
Sbjct: 381 aggtggtgggcttcttcctaagtgttgtaagtcaatatataagaagtgacacctgcttta 440

                                                                       
Query: 239 ccactcgtaaggtacccgtaggccagtcacagtgcttcttgctcagttggcttatgctga 298
           |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 ccactcgtaaggcacccgtaggccagtcacagtgcttcttgctcatttggcttatgctga 500

                                                    
Query: 299 ccatccagcaccacagaccccaagagtagagagtggcatgt 339
           |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 ccatccagcaccacagaccccatgagtagagagtggcatgt 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 741
Length adjustment: 9
Effective length of query: 330
Effective length of database: 732
Effective search space:   241560
Effective search space used:   241560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)