BAC Information

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BAC

Clone NameMSMg01-076K21
Chromosome11 (Build37)
Map Location 61,865,914 - 62,018,668
singlet/doubletdoublet
Overlap geneSpecc1
Upstream geneKcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558
Downstream geneAdora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076K21.T7 (MSMg01no076_k21.b1)MSMg01-076K21.TJ (MSMg01no076_k21.g1)
ACCAG299198AG299199
length790793
length of high quality
(start - end)
314 (107 - 420)324 (136 - 459)
definitionCHROMAT_FILE: MSMg01no076_k21.b1 PHD_FILE: MSMg01no076_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:44 2005CHROMAT_FILE: MSMg01no076_k21.g1 PHD_FILE: MSMg01no076_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,865,914 - 61,866,223)(62,018,421 - 62,018,668)
sequence
GGAAAGATAACAAAATAAAAAAGGGACAGAAGGACCACTGGCAACACTTT
CACTTCTCNTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCAACACCTTGTCCTGAAGGCAAACAGGAGAAGATT
GGCTTCTAAGCAGCTAGGAAGATGATCTCTCAAAGCCCACCCCTACAGTG
ACACACTTCCTCCAACAAGGCCCCCTCCTAATAGTGCCATTTTCTGGGCC
AGGCATATTCAAACCACCACAATAGTCCTCCATGAAGTGTAGTCAAAAGC
AAAGGAATCCTGCATGACTCTCGGCAGGTGCTTCATATAGAGGCTTCACC
CTGTAGCTCAGTTTCTTTCTGCATGGCGGACATTTTGTAAAAGCATCCTT
TAATGTCCTGAAGTGAAATTGATGAGTCTATCACTGTGGCTGAAAAAAAA
ATTAATGCCTTACCTGAACTATATAATAGAAAGAATAGGAAACCAGATCC
TAATGATGTATCATTGTGTGATGAGCAGCAGGCCCCTGGCTCCCTCAGAA
GGAGGGTAATGCCCTCACATTGTGTAAACTCTGTCAGAATAAACTGCTGC
ACATGAAACTGATAGTTCCAACCAGCATGACTAACTTATCACTGTTTGCT
GGAGGACTATTCCGTACTACCAAAATCTGGCGCCCTAAATTTCTTTGAGT
GGCCGCACAGTCCTAAGCTCCCCTCTTGAGTTGATTTAAGTCATCTTTGT
CCTGTAAAGCTGCACCTGTTGCTTCAACGTAATCCCCAAT
NNNNNNNCCCCNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCNNNNCTTTT
CTCTNTTCCTCCATGCTATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCTTATCCCCATA
GGGAGCCTTTAAGGCCTAATATAAATCTTATTTCAAATTACTCCCCAGAT
AAGCATTGTATATCCAGCATTTCCCAGACTTACTGGCCAAGGAAGAACAA
TCATCACAATCATCACCACCACCATCATCACTACTTTCTCCATCATCAAA
ACCACCATCATCATCACTACTATTATCAACATCACCACCACCACCACTGT
GTCCATCACCATCATCATCACCACCACCACCACTGTGTCCATCACCATCA
TCATCACCACCACCACCACTGTGTCCATCACCATCATCATCACCACCACC
ACCACTGTGTCTATCACCATCATCATCACCACCACCACCACTGTGTCCAT
CACCATCATCATCGCCACCACCACCACTGTGTCCATCACCATCATCATCA
CCACCACCACCACTGTGTCCTTCACCATCTTCATCACCACCAGCTTCACT
GTGACCATCACCATCAATCATCACCACCACCACCACTGTGTACATCTCCA
TTCATCATCCCCACTATCAAAATTGTGTCCACTCATCTAACATCTTCACC
ACCACCCACACCTATCATTACCCTTTACTTTCTTTTCTCCACTGCCCTCA
CCAAAACTTATAATTTAACCCATTTATCAGCTACACTTCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_k21.b1 MSMg01no076_k21.b1 CHROMAT_FILE:
MSMg01no076_k21.b1 PHD_FILE: MSMg01no076_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:44 2005
         (314 letters)



>mm_chr11_61865710_61866423
          Length = 714

 Score =  561 bits (290), Expect = e-164
 Identities = 305/310 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacaccttgtcctgaaggcaaacaggagaagattggcttctaagcagctaggaa 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacaccttgttctgaaggcaaacaggagaagattggcttctaagcagctaggaa 264

                                                                       
Query: 65  gatgatctctcaaagcccacccctacagtgacacacttcctccaacaaggccccctccta 124
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatggtctctcaaagcccacccctacagtgacacacttcctccaacaaggccccctccta 324

                                                                       
Query: 125 atagtgccattttctgggccaggcatattcaaaccaccacaatagtcctccatgaagtgt 184
           ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 325 atagtgccattttctgggccaagcatattcaaaccatcacaatagtcctccatgaagtgt 384

                                                                       
Query: 185 agtcaaaagcaaaggaatcctgcatgactctcggcaggtgcttcatatagaggcttcacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtcaaaagcaaaggaatcctgcatgactctcggcaggtgcttcatatagaggcttcacc 444

                                                                       
Query: 245 ctgtagctcagtttctttctgcatggcggacattttgtaaaagcatcctttaatgtcctg 304
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 ctgtagctcagtttctttctgcatggtggacattttgtaaaagcatcctttaatgtcctg 504

                     
Query: 305 aagtgaaatt 314
           ||||||||||
Sbjct: 505 aagtgaaatt 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no076_k21.g1 MSMg01no076_k21.g1 CHROMAT_FILE:
MSMg01no076_k21.g1 PHD_FILE: MSMg01no076_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:45 2005
         (324 letters)



>mm_chr11_62018358_62019081
          Length = 724

 Score =  464 bits (240), Expect = e-135
 Identities = 246/248 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgcttatccccatagggagcctttaaggcctaatataaatcttatttcaaattactccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttgcttatccccatagggagcctttaaggcctaatataaatcttatttcaaattactccc 252

                                                                       
Query: 61  cagataagcattgtatatccagcatttcccagacttactggccaaggaagaacaatcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 cagataagcattgtatatccagcatttcccagacttactggccaaggaagaacaatcatc 192

                                                                       
Query: 121 acaatcatcaccaccaccatcatcactactttctccatcatcaaaaccaccatcatcatc 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 191 acaatcatcaccaccaccatcatcactactatctccatcatcaaaaccaccatcatcatc 132

                                                                       
Query: 181 actactattatcaacatcaccaccaccaccactgtgtccatcaccatcatcatcaccacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 actactattatcaacatcaccaccaccaccactgtgtccatcaccatcatcatcaccacc 72

                   
Query: 241 accaccac 248
           || |||||
Sbjct: 71  actaccac 64


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)