BAC Information

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BAC

Clone NameMSMg01-076L01
Chromosome11 (Build37)
Map Location 28,049,966 - 28,050,429
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042377
Downstream geneEG626571, Ccdc85a, Efemp1, LOC382504, Pnpt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076L01.T7 (MSMg01no076_l01.b1)MSMg01-076L01.TJ (MSMg01no076_l01.g1)
ACCAG299206AG299207
length704765
length of high quality
(start - end)
464 (73 - 536)203 (132 - 334)
definitionCHROMAT_FILE: MSMg01no076_l01.b1 PHD_FILE: MSMg01no076_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:45 2005CHROMAT_FILE: MSMg01no076_l01.g1 PHD_FILE: MSMg01no076_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTCTTGTTACGTGGAGATTTACCAGAGTGACTATTCATTTTTA
TCACATGGTGATCAGGCAGAAAAATGTCTCGTACATATTTAGAATAATGT
GCTCCAACAAATTTTGCAAAATGTTCAACCAATTGCATCAATTTGCTTGC
CTATGTAGTTGTGAGATCAGTAGGTACAAAAGACCAAATTTAGTTGGTAC
ATTTTCAAAATAAGAATTGGAAGAACAAATTAACTTACCAATTCTATAAT
CTTGCCTTATATAAAGTCATCATTACATGAACTAGAGGCTTGTTTTGCAA
TTTTATTTTATCTTACAGAGCATGATATGGTCTTGGAATACATTCAGGTA
TCCCAATCAATCCAGATGTGGCCATTGCTAATCTTCTGGCAATTAATTAT
GTAGTGCTTTCAAATTTTCTAAGCTGTTATATTGAGCTATGATTTATTTG
TGTTTTTTAACTGTCCACATCTTTGCATGTGAGGCTTATTGAAGTAAACC
CTGCAGTGGCTGCCCTTCTGTGTAAAGACTGCAATTTGTCTACTCAATAG
TTACTACTGGATGTGTTTGTTAAAGCCTTTTAACTTCAATCCCATTTTTT
TGTGGATAAAAATGTACCACATAAGCGCCTTTCATAACAAAACAAATTCC
ACAT
NNNNNNNNNNNNNNNNNNNNNCCCCCCCTTTTCTTTCTCCCCTCTCCCCC
ATCCCTTCCCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAACTCACTTAAAGAGA
ACAGGAGAACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAA
ACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACAACC
AAACAGGTAGAAGTCCTTATAGAAAAACAGGAAAACACATCCCAACAGGT
GATGGAAATGAACAAAACCATACTAGAGCTAAAAAGGGAAGTAGACACAA
TACAGAAAACCCAAAGTGAGCCAACGCTGGAGATAGAAACCCTAGGAAAT
AAATCTGGAACCATAGATGCCAGCATCAGCAACAGAATACCAGATATGGA
AGAGAGAATCTCAGGTGCACAACACTCCCTAGAGAACATCGGCCACAACA
ATCAAAGACAATGGAAAATGCCCCATGATCCTAATTAAACACATCCAGCA
AATCCAGCACACATTGAGAAGACCAAACCTACCGATAATAGTAGCGCCTG
AGAATGAACATTTCCCACTCACAGTACCAGCCCACATTCTTCAACCAAAC
TATTGATCAAAACTTCCCCAATCCTCATTAAAGAGACGCCCATGAACCTA
CCAGAATTCTACCGAACTCCCCATACACTGCACCACCAAAAAATATCTCT
CCCGACCCAAAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_l01.b1 MSMg01no076_l01.b1 CHROMAT_FILE:
MSMg01no076_l01.b1 PHD_FILE: MSMg01no076_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:45 2005
         (464 letters)



>mm_chr11_28049766_28050629
          Length = 864

 Score =  874 bits (452), Expect = 0.0
 Identities = 461/464 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatttaccagagtgactattcatttttatcacatggtgatcaggcagaaaaatgtctcgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 gatttaccagagtgactattcatttttatcacatggtgatcaggcaggaaaatgtctcgt 260

                                                                       
Query: 61  acatatttagaataatgtgctccaacaaattttgcaaaatgttcaaccaattgcatcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatatttagaataatgtgctccaacaaattttgcaaaatgttcaaccaattgcatcaat 320

                                                                       
Query: 121 ttgcttgcctatgtagttgtgagatcagtaggtacaaaagaccaaatttagttggtacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcttgcctatgtagttgtgagatcagtaggtacaaaagaccaaatttagttggtacat 380

                                                                       
Query: 181 tttcaaaataagaattggaagaacaaattaacttaccaattctataatcttgccttatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcaaaataagaattggaagaacaaattaacttaccaattctataatcttgccttatat 440

                                                                       
Query: 241 aaagtcatcattacatgaactagaggcttgttttgcaattttattttatcttacagagca 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 aaagtcatcattacatgaactagaggtttgttttgcaattttattttatcttacagagca 500

                                                                       
Query: 301 tgatatggtcttggaatacattcaggtatcccaatcaatccagatgtggccattgctaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgatatggtcttggaatacattcaggtatcccaatcaatccagatgtggccattgctaat 560

                                                                       
Query: 361 cttctggcaattaattatgtagtgctttcaaattttctaagctgttatattgagctatga 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 cttctggcaattaattatgtagtgctttcaaattttctaagttgttatattgagctatga 620

                                                       
Query: 421 tttatttgtgttttttaactgtccacatctttgcatgtgaggct 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttatttgtgttttttaactgtccacatctttgcatgtgaggct 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)