BAC Information

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BAC

Clone NameMSMg01-076O14
Chromosome11 (Build37)
Map Location 116,921,122 - 116,921,695
singlet/doubletsinglet
Overlap geneLOC100042036
Upstream geneUnk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b
Downstream geneSec14l1, Sept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076O14.T7 (MSMg01no076_o14.b1)MSMg01-076O14.TJ (MSMg01no076_o14.g1)
ACCAG299376AG299377
length757731
length of high quality
(start - end)		246 (43 - 288)563 (74 - 636)
definitionCHROMAT_FILE: MSMg01no076_o14.b1 PHD_FILE: MSMg01no076_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:04 2005CHROMAT_FILE: MSMg01no076_o14.g1 PHD_FILE: MSMg01no076_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGGGGACTCTTGAGACGGATAAAAATGCCAGAACCGCCCGGAGAGAGG
CTGCAGCAGCTGCTCCGGCTGCTTGGAGGTATCCTGATTGCAAAGATTGG
ATTTGCTCCAAGGAACTCAGCGCCCCTAGTCAGCAGGAAGTAGTCTAACG
GGATCGATGCCCCCTCCGCCCCCACCCCCACCCCAGCCTTCTTTCTTTCC
TACCTAGTGTTGGAGGTTGGAAGGAATAGGATGGAGAAGAGCAGTATTGC
AAAAACCCAATAACGTAACCTATTTTTCCGACACGACCACGAATCATGAC
CAGCCTTCTCTCTGTATCTTCTGACTACTGCCTGCGTATCGGATTATTAT
AATCCTCAGTCTAACCCCCCGTAGTTCATTGTATCCGCCTTTTCTCACTC
AATTCACTTTCTTGTTTCTCTCCTTTTTATACCCTCCTCTCCGCCCTCTT
TCTCCTCTTCTTCTCTTATCTTTTCCTCTTTTACCCTCTCCCTCCTTCTC
ACCTTTCTCCTCCTCTTCCTCGTCTATCCTTTATCCCTTCCTATCTCTTT
TCTCTCCCCTCTTATTACCTCCCTCCTGCTTTCCCTTTTCTTTATTTCCC
ACTTCTTTCTGTTCCCCATTCTACTCTCCTCTCTCTCCTCTTACATCCTC
TTCCTCCCCTACCTATCGTTCCTCCTTTTCCTTTCCCTCTTTACTTCCTT
TTTTTTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCATGGCTACACAGAGAAA
CCCTGCTTCGAAACCAAAAAAAAAAAAAAATTATTTTATAGCCCCTGTTT
CTAAATGAGGTCACACACAGTTCAGGGTCCTAGCAGTCAGGACTCCAACC
TATGCACGTTGAGTAGGAGCGGACACATTAGCTTATACCGTTAGTGACAT
CTTTTCCCTAAAGCCAGAAGGTGCTGTTGGAGCTGCCTCCCTCTGTCACT
GCACAAGGCTCTCTGGAACCACCGAACTGGGAGAACGATGCACCCTAGCA
GCCAAGTGGCTTGGAAAACGCATTTAGGCTCAAACAAAAGGCACCAATTG
AACAAAGCCAGCAAGACACGGCACTAATTGGCAGCCACACTTTGTTTCTC
CCCCCTCCAGCTGCCTCTGGAATCAGAAAACAACCATTCGAGTGAAAGCC
ATGAAATTAAAATGCTTTTTAAAAAACGGGCTAATGTTCTGCGGGACCGT
GTTTCCAAGACAGCCTTTGTTCCGTCTTCCGGGCTTTCTCATCAGCAGAA
AACACTGTCTTGGATTGACAGGGGCAGGAGAAGATAAGAAGCCAGCCGTG
GCCCTGAACACATCTCTGGCAATTTTCTCTTCTATCTTATCGAAACCTCC
AAGACACGTTATTTTCATCTGACGTGTGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_o14.g1 MSMg01no076_o14.g1 CHROMAT_FILE:
MSMg01no076_o14.g1 PHD_FILE: MSMg01no076_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:04 2005
         (563 letters)



>mm_chr11_116920931_116921895
          Length = 965

 Score = 1033 bits (534), Expect = 0.0
 Identities = 560/574 (97%), Gaps = 11/574 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccatggctacacagagaaaccctgcttcgaaacc---------aaaaaaaaa 51
           ||||||||||||||||||||||||||||||||||||||||||         |||||||||
Sbjct: 192 caggacagccatggctacacagagaaaccctgcttcgaaaccaaaaaaaaaaaaaaaaaa 251

                                                                       
Query: 52  aaaaaattattttatagcccctgtttctaaatgaggtcacacacagttcagggtcctagc 111
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aaaaaattattttatagcccctgtttctaaatgaggtcacacacagttcagggtcctagc 311

                                                                       
Query: 112 agtcaggactccaacctatgcacgttgagtaggagcggacacattagcttataccgttag 171
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 312 agtcaggactccaacctatgcatgttgagtaggagcggacacattagcttataccgttag 371

                                                                       
Query: 172 tgacatcttttccctaaagccagaaggtgctgttggagctgcctccctctgtcactgcac 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tgacatcttttccctaaagccagaaggtgctgttggagctgcctccctctgtcactgcac 431

                                                                       
Query: 232 aaggctctctggaaccaccgaactgggagaacgatgcaccctagcagccaagtggcttgg 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aaggctctctggaaccaccgaactgggagaacgatgcaccctagcagccaagtggcttgg 491

                                                                       
Query: 292 aaaacgcatttaggctcaaacaaaaggcaccaattgaacaaagccagcaagacacggcac 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 492 aaaacgcatttaggctcaaacaaaaggcaccaattgaacaaagccagcaagacacagcac 551

                                                                       
Query: 352 taattggcagccacactttgtttctcccccc-tccagctgcctctggaatcagaaaacaa 410
           ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 552 taattagcagccacactttgtttctccccccatccagctgcctctggaatcagaaaacaa 611

                                                                       
Query: 411 ccattcgagtgaaagccatgaaattaaaatgctttttaaaaaa-cgggctaatgttctgc 469
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 612 ccattcgagtgaaagccatgaaattaaaatgctttttaaaaaaacgggctaatgttctgc 671

                                                                       
Query: 470 gggaccgtgtttccaagacagcctttgttccgtcttccgggctttctcatcagcagaaaa 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gggaccgtgtttccaagacagcctttgttccgtcttccgggctttctcatcagcagaaaa 731

                                             
Query: 530 cactgtcttggattgacaggggcaggagaagata 563
           ||||||||||||||||||||||||||||||||||
Sbjct: 732 cactgtcttggattgacaggggcaggagaagata 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 965
Length adjustment: 10
Effective length of query: 553
Effective length of database: 955
Effective search space:   528115
Effective search space used:   528115
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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