BAC Information

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BAC

Clone NameMSMg01-078H06
Chromosome11 (Build37)
Map Location 111,026,200 - 111,026,424
singlet/doubletsinglet
Overlap genenone
Upstream geneAbca9, Abca6, Abca5, Map2k6, LOC100041523, Kcnj16, Kcnj2
Downstream geneLOC667003, LOC100041539, LOC100041559, EG629966, LOC629967, LOC100041589, LOC100043020
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078H06.T7 (MSMg01no078_h06.b1)MSMg01-078H06.TJ (MSMg01no078_h06.g1)
ACCAG299784AG299785
length698691
length of high quality
(start - end)
225 (69 - 293)367 (73 - 439)
definitionCHROMAT_FILE: MSMg01no078_h06.b1 PHD_FILE: MSMg01no078_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:47 2005CHROMAT_FILE: MSMg01no078_h06.g1 PHD_FILE: MSMg01no078_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGCATTTACCCCAAGGTGGCAACAACTGGGAGCCTGTAAAATCTCCAA
TGCTCTGCCATGGCATGCACAAGAGATTGTCAGTAGGAAGCTGTGATGCA
CAGACAATGATCATATGAGCAAGGTGAAAAGTGTGAGGGAGTTGGAGAAA
CAACACTTAACTCTGATACACAGAGGGCTTCTAAGCAGCTTCAGGAAGGA
GAAGTCACAAGCAACTTCATAAAGGACAGTTTCTCCCACATCAGATAAGG
AAGCAGAAAAATAGAAATATGAAGTGCAGGGTCCTGGTGGGAGCTCAGCT
GATATTCCCATTTCTGCTTTACGTACTTTTGTTTTTGCTCAATTTCTTTA
CTTTACTCTCCAGGCAAGTACAAATGGTGGCTACAGAGTAATACGTGATA
TTTTAAACAGCTCATTTGAAATGCTTCTGTTCGAACATGATGAGGACAAC
TGAACTTTTATGTCATCTAATTGTCCCCAGTGTACTTTACACTTGTTACA
TCTACCTTTCCTCTACCTTGATATAAACATTTAGCTTACCTCCTACCCCT
CGCTCATGATTCTTTTATTTCCATATTCTCCCGAACTCCATCTCGCTCTT
CTCGTGCCCTCCAGGAACATCTTTGTACCCTTGCATTTCAAAAAAATC
AATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCTGAGA
AGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAACTCAGGTGACAGCAGGTGCTGGCAAGGATGTGGAAAAAGAGGAACAC
TCCTCCATTTTTGGTGGGATTGCAAGCTTGTACAACCACTTTGGAAATCA
GTCTGGCGGTTCCTCATATAATTGGACATAGTACTACCAGAGGATCCCAC
AATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCCAGATGTCCATAAACAGAGAAATCGTAAAGAAAATGTGT
TATATTGACCGAAAGGCGTACTACTTCAGTATTAAAAAGAATGAATTTAT
GAAATTCCTAGGCTAATGGACGGACCTGTAGGCAATTATTCTGACTGAGG
TAACCCAATCATCAAAGAACTCTCATGATATGTACTCACTGATAATCTCA
TATTATCCCAGAAACCTATATACACCTTATAACCTATATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_h06.b1 MSMg01no078_h06.b1 CHROMAT_FILE:
MSMg01no078_h06.b1 PHD_FILE: MSMg01no078_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:47 2005
         (225 letters)



>mm_chr11_111026000_111026624
          Length = 625

 Score =  412 bits (213), Expect = e-120
 Identities = 222/225 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggcaacaactgggagcctgtaaaatctccaatgctctgccatggcatgcacaagagatt 60
           ||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||
Sbjct: 201 tggcaacaactgggagcctgttaaatctccattgttctgccatggcatgcacaagagatt 260

                                                                       
Query: 61  gtcagtaggaagctgtgatgcacagacaatgatcatatgagcaaggtgaaaagtgtgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcagtaggaagctgtgatgcacagacaatgatcatatgagcaaggtgaaaagtgtgagg 320

                                                                       
Query: 121 gagttggagaaacaacacttaactctgatacacagagggcttctaagcagcttcaggaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagttggagaaacaacacttaactctgatacacagagggcttctaagcagcttcaggaag 380

                                                        
Query: 181 gagaagtcacaagcaacttcataaaggacagtttctcccacatca 225
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaagtcacaagcaacttcataaaggacagtttctcccacatca 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space:   133056
Effective search space used:   133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)