Query= MSMg01no078_m05.b1 MSMg01no078_m05.b1 CHROMAT_FILE:
MSMg01no078_m05.b1 PHD_FILE: MSMg01no078_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:11 2005
(359 letters)
>mm_chr11_24991456_24992217
Length = 762
Score = 619 bits (320), Expect = 0.0
Identities = 349/360 (96%), Gaps = 5/360 (1%)
Strand = Plus / Minus
Query: 4 ggaattctgtcatcacccagagtccatcacctcggctgcagtgccaaagctatgaggaag 63
||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 562 ggaattctgtcatcaggcagagtccatcacctcggctgcagtggcaaagctgtgaggaag 503
Query: 64 acttagcctacacctttctcacataccattaatattttagggaacatctcagtgttctag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 acttagcctacacctttctcacataccattaatattttagggaacatctcagtgttctag 443
Query: 124 ggtattcatctcagaaaaatatctaacatatagattgcttttctgttgttgccatcaaca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 442 ggtattcatctcagaaaaatatctaacatatagattgcttttctgttgttgccatcagca 383
Query: 184 ataaaaggatcaacg-ctatttttcaagcagacgtcttgaatatatttaaagcaaggagg 242
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ataaaaggatcaacgtc-atttttcaagcagacgtcttgaatatatttaaagcaaggagg 324
Query: 243 ttaaaaaaaaagttgttgttttttttt---gtttgtttttaaagtcctttctcctttgaa 299
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 323 taaaaaaaaaagttgttgttttttttttttgtttgtttttaaagtcctttctcctttgaa 264
Query: 300 atccaattgtaaaacttggattggcccataacagcctgtcaataagcacagtggactaaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atccaattgtaaaacttggattggcccataacagcctgtcaataagcacagtggactaaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 762
Length adjustment: 9
Effective length of query: 350
Effective length of database: 753
Effective search space: 263550
Effective search space used: 263550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_m05.g1 MSMg01no078_m05.g1 CHROMAT_FILE:
MSMg01no078_m05.g1 PHD_FILE: MSMg01no078_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:11 2005
(499 letters)
>mm_chr11_24829233_24830131
Length = 899
Score = 926 bits (479), Expect = 0.0
Identities = 494/499 (98%)
Strand = Plus / Plus
Query: 1 tgttttcattgtgatgtttcctcgtgggtcttcctaattactaacatgataggcattatt 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tgttttcattgtgatgtttcctcgtgggtcttcctaattactaacacgataggcattatt 260
Query: 61 ctatttgggaaatatgtgctgaataatgatattactgcttccctacaaaatatttatgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatttgggaaatatgtgctgaataatgatattactgcttccctacaaaatatttatgct 320
Query: 121 aaagtcctaactcccattaactcagaatatgaccacatttggaagtggggtctttaagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagtcctaactcccattaactcagaatatgaccacatttggaagtggggtctttaagag 380
Query: 181 gtaattaaatgaaaatgggatcatttaataacaaatcagaattgggccctaatcccctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaattaaatgaaaatgggatcatttaataacaaatcagaattgggccctaatcccctat 440
Query: 241 aactgtaaatcgggattcatagaggtacaggcctaagcccacatgaagaaacagggagaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 aactgtaaatcgggattcatagaggtacaggcctaagcccacatgaagaaacagggggaa 500
Query: 301 gatgacacctccaagagagagaggccttagaaggtattccacctattaaaactccatctc 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatgacacctccaagtgagagaggccttagaaggtattccacctattaaaactccatctc 560
Query: 361 accattgttctagatttcatgacatctttaataatggtctttttttggtccagctccttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accattgttctagatttcatgacatctttaataatggtctttttttggtccagctccttg 620
Query: 421 tcatttttccagtgattgctttaacgaaactagagtactgaatgtgaacacaattttacc 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 tcatttttccagtgattgctttaacgaaactagagtactgaatgtgaccacaattttacc 680
Query: 481 ttgcttgtacttaccagta 499
|||||||| ||||||||||
Sbjct: 681 ttgcttgtgcttaccagta 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
