MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-078O01
Chromosome	11 (Build37)
Map Location	55,064,758 - 55,065,299
singlet/doublet	singlet
Overlap gene	Fat2
Upstream gene	Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1, Rapgef6, Cdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1
Downstream gene	Sparc, Atox1, G3bp, Glra1, Nmur2, LOC100040816
Link	Open Mouse BAC browser

Click to get alignment info.

name	Il3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16187 MGI:96552
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Acsl6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216739 MGI:894291
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 4 mRNAs

name	4930404A10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74847 MGI:1922097
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 Proteins

name	LOC100041400 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041400
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 171 ESTs, 4 Proteins

name	LOC100041411 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041411
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Fnip1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216742 MGI:2444668
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rapgef6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:192786 MGI:2384761
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cdc42se2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72729 MGI:1919979
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC677786 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:677786
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 1 Protein pseudo : _no_value

name	LOC100041463 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041463
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Lyrm7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75530 MGI:1922780
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hint1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15254 MGI:1321133
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gpx3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14778 MGI:105102
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tnip1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57783 MGI:1926194
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667826 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667826
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins pseudo : _no_value

name	Anxa6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11749 MGI:88255
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc69 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52570 MGI:1196234
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm2a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14667 MGI:95762
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667832 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667832
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 61 ESTs, 2 Proteins

name	Slc36a3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:215332 MGI:2665001
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc36a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:246049 MGI:1891430
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc36a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:215335 MGI:2445299
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fat2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245827 MGI:2685369
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sparc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20692 MGI:98373
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atox1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11927 MGI:1333855
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	G3bp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27041 MGI:1351465
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Glra1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14654 MGI:95747
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nmur2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216749 MGI:2441765
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040816 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040816
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	Il3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144227228 GeneID:16187 MGI:96552
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 3 transcript_id : NM_010556.4

name	Acsl6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75992914 GeneID:216739 MGI:894291
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acyl-CoA synthetase long-chain family member 6 transcript_id : NM_001033598.1

name	Acsl6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75992910 GeneID:216739 MGI:894291
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acyl-CoA synthetase long-chain family member 6 transcript_id : NM_144823.4

name	Acsl6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75992912 GeneID:216739 MGI:894291
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acyl-CoA synthetase long-chain family member 6 transcript_id : NM_001033597.1

name	Acsl6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75992916 GeneID:216739 MGI:894291
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acyl-CoA synthetase long-chain family member 6 transcript_id : NM_001033599.1

name	4930404A10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94390091 GeneID:74847 MGI:1922097
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 Proteins product : RIKEN cDNA 4930404A10 gene transcript_id : XM_484022.3

name	LOC100041400 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261906 GeneID:100041400
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 171 ESTs, 4 Proteins product : similar to oxidative stress responsive 1 transcript_id : XM_001476534.1

name	Fnip1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:55925633 GeneID:216742 MGI:2444668
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : folliculin interacting protein 1 transcript_id : NM_173753.3

name	Rapgef6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82617637 GeneID:192786 MGI:2384761
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Rap guanine nucleotide exchange factor (GEF) 6 transcript_id : NM_175258.3

name	Cdc42se2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142373958 GeneID:72729 MGI:1919979
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CDC42 small effector 2 transcript_id : NM_178626.2

name	LOC100041463 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261909 GeneID:100041463
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100041463 transcript_id : XM_001476700.1

name	Lyrm7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385502 GeneID:75530 MGI:1922780
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LYR motif containing 7 transcript_id : NM_029327.2

name	Hint1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892228 GeneID:15254 MGI:1321133
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : histidine triad nucleotide binding protein 1 transcript_id : NM_008248.2

name	Gpx3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680076 GeneID:14778 MGI:105102
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glutathione peroxidase 3 transcript_id : NM_008161.1

name	Tnip1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:10946635 GeneID:57783 MGI:1926194
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TNFAIP3 interacting protein 1 transcript_id : NM_021327.1

name	Anxa6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142362720 GeneID:11749 MGI:88255
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : annexin A6 transcript_id : NM_013472.3

name	Ccdc69 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115270980 GeneID:52570 MGI:1196234
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 69 transcript_id : NM_177471.4

name	Gm2a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560810 GeneID:14667 MGI:95762
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GM2 ganglioside activator protein transcript_id : NM_010299.2

name	LOC667832 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94390093 GeneID:667832
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 61 ESTs, 2 Proteins product : similar to ATP synthase, H+ transporting, mitochondrial F0 complex, subunit b transcript_id : XM_992793.1

name	Slc36a3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31559778 GeneID:215332 MGI:2665001
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 36 (proton/amino acid symporter), member 3 transcript_id : NM_172258.2

name	Slc36a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802094 GeneID:246049 MGI:1891430
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 36 (proton/amino acid symporter), member 2 transcript_id : NM_153170.2

name	Slc36a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982565 GeneID:215335 MGI:2445299
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 36 (proton/amino acid symporter), member 1 transcript_id : NM_153139.3

name	Fat2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125630307 GeneID:245827 MGI:2685369
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FAT tumor suppressor homolog 2 (Drosophila) transcript_id : NM_001029988.2

name	Sparc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385873 GeneID:20692 MGI:98373
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : secreted acidic cysteine rich glycoprotein transcript_id : NM_009242.2

name	Atox1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981888 GeneID:11927 MGI:1333855
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATX1 (antioxidant protein 1) homolog 1 (yeast) transcript_id : NM_009720.2

name	G3bp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130851 GeneID:27041 MGI:1351465
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Ras-GTPase-activating protein SH3-domain binding protein transcript_id : NM_013716.2

name	Glra1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130520 GeneID:14654 MGI:95747
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glycine receptor, alpha 1 subunit transcript_id : NM_020492.3

name	Nmur2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803284 GeneID:216749 MGI:2441765
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neuromedin U receptor 2 transcript_id : NM_153079.3

name	LOC100040816 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261890 GeneID:100040816
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to Ubtf protein transcript_id : XM_001475326.1

name	Il3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982791 CCDS:CCDS24693.1 GeneID:16187 MGI:96552
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IDA]; GO:0008083 - growth factor activity [Evidence IEA]; GO:0005135 - interleukin-3 receptor binding [Evidence IEA] [Evidence ISS] GO_process : GO:0019221 - cytokine and chemokine mediated signaling pathway [Evidence IDA]; GO:0006955 - immune response [Evidence IEA]; GO:0008284 - positive regulation of cell proliferation [Evidence IDA]; GO:0050731 - positive regulation of peptidyl-tyrosine phosphorylation [Evidence IDA]; GO:0045885 - positive regulation of survival gene product activity [Evidence IDA] codon_start : 1 product : interleukin 3 protein_id : NP_034686.2

name	Acsl6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75992911 CCDS:CCDS24695.1 GeneID:216739 MGI:894291
definition	EC_number : 6.2.1.3 GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0005777 - peroxisome [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0004467 - long-chain-fatty-acid-CoA ligase activity [Evidence IDA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006631 - fatty acid metabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0007405 - neuroblast proliferation [Evidence IDA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; long-chain acyl-CoA synthetase; Lacs-like; long-chain acyl-CoA synthetase-like; fatty acid Coenzyme A ligase, long chain 6 product : acyl-CoA synthetase long-chain family member 6 isoform 1 protein_id : NP_659072.3

name	Acsl6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75992913 CCDS:CCDS24694.1 GeneID:216739 MGI:894291
definition	EC_number : 6.2.1.3 GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0005777 - peroxisome [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0004467 - long-chain-fatty-acid-CoA ligase activity [Evidence IDA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006631 - fatty acid metabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0007405 - neuroblast proliferation [Evidence IDA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; long-chain acyl-CoA synthetase; Lacs-like; long-chain acyl-CoA synthetase-like; fatty acid Coenzyme A ligase, long chain 6 product : acyl-CoA synthetase long-chain family member 6 isoform 2 protein_id : NP_001028769.1

name	Acsl6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75992915 CCDS:CCDS24696.1 GeneID:216739 MGI:894291
definition	EC_number : 6.2.1.3 GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0005777 - peroxisome [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0004467 - long-chain-fatty-acid-CoA ligase activity [Evidence IDA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006631 - fatty acid metabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0007405 - neuroblast proliferation [Evidence IDA] codon_start : 1 note : isoform 3 is encoded by transcript variant 3; long-chain acyl-CoA synthetase; Lacs-like; long-chain acyl-CoA synthetase-like; fatty acid Coenzyme A ligase, long chain 6 product : acyl-CoA synthetase long-chain family member 6 isoform 3 protein_id : NP_001028770.1

name	Acsl6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75992917 CCDS:CCDS24697.1 GeneID:216739 MGI:894291
definition	EC_number : 6.2.1.3 GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0005777 - peroxisome [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0004467 - long-chain-fatty-acid-CoA ligase activity [Evidence IDA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006631 - fatty acid metabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0007405 - neuroblast proliferation [Evidence IDA] codon_start : 1 note : isoform 4 is encoded by transcript variant 4; long-chain acyl-CoA synthetase; Lacs-like; long-chain acyl-CoA synthetase-like; fatty acid Coenzyme A ligase, long chain 6 product : acyl-CoA synthetase long-chain family member 6 isoform 4 protein_id : NP_001028771.1

name	4930404A10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94390092 GeneID:74847 MGI:1922097
definition	codon_start : 1 product : hypothetical protein LOC74847 protein_id : XP_484022.2

name	LOC100041400 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261907 GeneID:100041400
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476584.1

name	Fnip1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:55925634 CCDS:CCDS24698.1 GeneID:216742 MGI:2444668
definition	codon_start : 1 product : folliculin interacting protein 1 protein_id : NP_776114.2

name	Rapgef6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82617638 CCDS:CCDS24699.1 GeneID:192786 MGI:2384761
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA] GO_process : GO:0051056 - regulation of small GTPase mediated signal transduction [Evidence IEA] codon_start : 1 note : PDZ domain containing guanine nucleotide exchange factor(GEF)1; rap guanine nucleotide exchange factor 2; PDZ domain containing guanine nucleotide exchange factor (GEF) 2 product : Rap guanine nucleotide exchange factor (GEF) 6 protein_id : NP_780467.2

name	Cdc42se2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30519967 GeneID:72729 MGI:1919979
definition	GO_function : GO:0016301 - kinase activity [Evidence IEA] codon_start : 1 product : CDC42 small effector 2 protein_id : NP_848741.1

name	LOC100041463 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261910 GeneID:100041463
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476750.1

name	Lyrm7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:53850661 GeneID:75530 MGI:1922780
definition	codon_start : 1 product : LYR motif containing 7 protein_id : NP_083603.1

name	Hint1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33468857 CCDS:CCDS24702.1 GeneID:15254 MGI:1321133
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA] codon_start : 1 note : protein kinase C inhibitor 1; PKC inhibitor/ interacting protein; histidine triad nucleotide-binding protein product : histidine triad nucleotide binding protein 1 protein_id : NP_032274.1

name	Gpx3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:15011841 CCDS:CCDS24703.1 GeneID:14778 MGI:105102
definition	GO_component : GO:0005615 - extracellular space [Evidence ISS] GO_function : GO:0004602 - glutathione peroxidase activity [Evidence IEA] [Evidence ISS]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]; GO:0008430 - selenium binding [Evidence ISS] [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence ISS] GO_process : GO:0042744 - hydrogen peroxide catabolism [Evidence ISS]; GO:0051289 - protein homotetramerization [Evidence ISS]; GO:0006982 - response to lipid hydroperoxide [Evidence ISS]; GO:0006979 - response to oxidative stress [Evidence IEA] codon_start : 1 note : plasma GPx; extracellular GPx product : glutathione peroxidase 3 protein_id : NP_032187.2 transl_except : (pos:54720758..54720760,aa:Sec)

name	Tnip1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946636 CCDS:CCDS24704.1 GeneID:57783 MGI:1926194
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] codon_start : 1 exception : mismatches in translation note : A20-binding inhibitor of NF-kappa B activation; Nef-associated factor 1 product : TNFAIP3 interacting protein 1 protein_id : NP_067302.1

name	Anxa6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981302 CCDS:CCDS24705.1 GeneID:11749 MGI:88255
definition	GO_component : GO:0048471 - perinuclear region [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005544 - calcium-dependent phospholipid binding [Evidence IEA] GO_process : GO:0006816 - calcium ion transport [Evidence IMP]; GO:0006937 - regulation of muscle contraction [Evidence IMP] codon_start : 1 note : annexin VI, p68; Annexin VI product : annexin A6 protein_id : NP_038500.2

name	Ccdc69 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:115270981 GeneID:52570 MGI:1196234
definition	codon_start : 1 product : coiled-coil domain containing 69 protein_id : NP_803422.2

name	Gm2a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6806917 CCDS:CCDS24707.1 GeneID:14667 MGI:95762
definition	GO_component : GO:0005764 - lysosome [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0004563 - beta-N-acetylhexosaminidase activity [Evidence IMP]; GO:0008047 - enzyme activator activity [Evidence IDA] GO_process : GO:0006689 - ganglioside catabolism [Evidence IMP]; GO:0007611 - learning and/or memory [Evidence IMP]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0050877 - neurophysiological process [Evidence IMP]; GO:0009313 - oligosaccharide catabolism [Evidence IMP]; GO:0050885 - regulation of balance [Evidence IMP]; GO:0019915 - sequestering of lipid [Evidence IMP]; GO:0006665 - sphingolipid metabolism [Evidence IEA] codon_start : 1 product : GM2 ganglioside activator protein protein_id : NP_034429.1

name	LOC667832 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94390094 GeneID:667832
definition	codon_start : 1 product : hypothetical protein protein_id : XP_997887.1

name	Slc36a3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:26986545 CCDS:CCDS24708.1 GeneID:215332 MGI:2665001
definition	codon_start : 1 exception : mismatches in translation note : proton/amino acid transporter 3; tramdorin 2 product : solute carrier family 36 (proton/amino acid symporter), member 3 protein_id : NP_758462.1

name	Slc36a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23346622 CCDS:CCDS24709.1 GeneID:246049 MGI:1891430
definition	GO_component : GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0015187 - glycine transporter activity [Evidence IDA]; GO:0005280 - hydrogen:amino acid symporter activity [Evidence IDA]; GO:0015180 - L-alanine transporter activity [Evidence IDA]; GO:0015193 - L-proline transporter activity [Evidence IDA]; GO:0005302 - L-tyrosine transporter activity [Evidence IDA] GO_process : GO:0015816 - glycine transport [Evidence IDA]; GO:0015808 - L-alanine transport [Evidence IDA]; GO:0015824 - proline transport [Evidence IDA]; GO:0015992 - proton transport [Evidence IDA] codon_start : 1 exception : mismatches in translation note : proton/amino acid transporter 2; tramdorin 1 (transmembrane domain rich protein) product : tramdorin 1 protein_id : NP_694810.1

name	Slc36a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982566 GeneID:215335 MGI:2445299
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005764 - lysosome [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015171 - amino acid transporter activity [Evidence IEA]; GO:0015187 - glycine transporter activity [Evidence IDA]; GO:0005280 - hydrogen:amino acid symporter activity [Evidence IDA]; GO:0015180 - L-alanine transporter activity [Evidence IDA]; GO:0015193 - L-proline transporter activity [Evidence IDA]; GO:0005302 - L-tyrosine transporter activity [Evidence IDA]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0006865 - amino acid transport [Evidence IEA]; GO:0015816 - glycine transport [Evidence IDA]; GO:0015808 - L-alanine transport [Evidence IDA]; GO:0015824 - proline transport [Evidence IDA]; GO:0015992 - proton transport [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : proton/amino acid transporter 1 product : solute carrier family 36 member 1 protein_id : NP_694779.2

name	Fat2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71725377 GeneID:245827 MGI:2685369
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA] GO_process : GO:0007156 - homophilic cell adhesion [Evidence IEA] codon_start : 1 product : FAT tumor suppressor homolog 2 protein_id : NP_001025159.1

name	Sparc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678077 CCDS:CCDS24712.1 GeneID:20692 MGI:98373
definition	GO_component : GO:0005604 - basement membrane [Evidence IEA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005507 - copper ion binding [Evidence IEA] GO_process : GO:0007169 - transmembrane receptor protein tyrosine kinase signaling pathway [Evidence NAS] codon_start : 1 note : osteonectin product : secreted acidic cysteine rich glycoprotein protein_id : NP_033268.1

name	Atox1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753136 GeneID:11927 MGI:1333855
definition	GO_function : GO:0005507 - copper ion binding [Evidence IEA]; GO:0005375 - copper ion transporter activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0006878 - copper ion homeostasis [Evidence IMP]; GO:0006825 - copper ion transport [Evidence IMP]; GO:0006811 - ion transport [Evidence IEA]; GO:0030001 - metal ion transport [Evidence IEA]; GO:0006457 - protein folding [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : antioxidant protein 1 protein_id : NP_033850.1

name	G3bp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305075 CCDS:CCDS24714.1 GeneID:27041 MGI:1351465
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : GAP SH3 binding protein product : ras-GTPase-activating protein SH3-domain binding protein protein_id : NP_038744.1

name	Glra1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982694 CCDS:CCDS24715.1 GeneID:14654 MGI:95747
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0045211 - postsynaptic membrane [Evidence IEA] GO_function : GO:0005254 - chloride channel activity [Evidence IEA]; GO:0031404 - chloride ion binding [Evidence IEA]; GO:0005230 - extracellular ligand-gated ion channel activity [Evidence IEA]; GO:0004890 - GABA-A receptor activity [Evidence IEA]; GO:0016934 - glycine-gated chloride channel activity [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0030594 - neurotransmitter receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006821 - chloride transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : glycine receptor, alpha 1 subunit protein_id : NP_065238.2

name	Nmur2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543326 CCDS:CCDS24716.1 GeneID:216749 MGI:2441765
definition	GO_component : GO:0016021 - integral to membrane [Evidence IC] GO_function : GO:0008188 - neuropeptide receptor activity [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007218 - neuropeptide signaling pathway [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : neuromedin U receptor 2 protein_id : NP_694719.2

name	LOC100040816 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261891 GeneID:100040816
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475376.1

name	LOC100041411 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041411
definition	number : 1 pseudo : _no_value

name	LOC677786 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261908 GeneID:677786
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 1 Protein product : similar to heterogeneous nuclear ribonucleoprotein A3 pseudo : _no_value transcript_id : XR_032858.1

name	LOC667826 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261889 GeneID:667826
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins product : similar to ribosomal protein S11 pseudo : _no_value transcript_id : XR_032113.1

clone name	MSMg01-105C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473K02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-089L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-049A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-191M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303D23
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-303I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419A24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-081E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082P01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-399B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-400B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-186D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349I18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231M02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-217N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-014H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171K02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194H16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071I03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233B14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084F22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313P15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021B10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188E15
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-078O01.T7 (MSMg01no078_o01.b1)	MSMg01-078O01.TJ (MSMg01no078_o01.g1)
ACC	AG300104	AG300105
length	764	703
length of high quality (start - end)	214 (47 - 260)	542 (78 - 619)
definition	CHROMAT_FILE: MSMg01no078_o01.b1 PHD_FILE: MSMg01no078_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:20 2005	CHROMAT_FILE: MSMg01no078_o01.g1 PHD_FILE: MSMg01no078_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:20 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG GAATTCCAGACTACTGAGGGATTTGGAGAAAGATCTTGTCTCAGAAAAAC AAAGAAAAGGTAAAGAACAACTGAAAAAGACATTGACTTCTGGCTTACAC ACATACACACACACACACACACACACCATATACACATCACACACAGACAT GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG AAGGAAGGAAGTTTGTTTCCCTCTATTCTTATTTTTTTTTTTTCACCCCC TCTTTCTTTCCCCCCCTATACTTTCTTTTTTTTTTGGCCTTCCCCATCCT ACTCCCTTATTCTTCCCCCCCCACCCAACCTCCTTCCTCCTTCACTTTCC CTCATTCACCAATTTCCCCCTTTCCCCATCCCACAATCCTTCTTCTAATT ACCCCTCCTACACACACCCCCCCCCTCTCACTACCCACCATCCCCCCTTT CCCCCCCTATCCCAACCCCCTTTCATCCTACCTATCCCCACCCCCCCCTC CCCTTTCCATTTTTCAACCCATTTCCCCCCCCTTCCTTTCACATATTGTC TCAGCCTCACATAACACCCCCCATTCCCCCACCCCCCCCCACTATCCCCT TACACTATCCCCTTAAATCTCCCTCTCATTTCTCCTTTTACATCTATTTT TTACCGCATATAATCCTAATATTCTACCAATCCATCCTTTTCTCCCTCGC CCTCCACTTACCAA	NCTACATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGCGCAGAAGGTTTCAGGCA GGATCCCACCAGCAGAGGGGGAACAAGTCCTGAAGCTTCAAGAACAAGAC TTCCAGAAGATGGAAGTCCATGTGACTCAACTTCCAAGAATGTTCTTGTT GCCAGTGCCCAGAATAATGCTGACATACGACACTTGGCATAGATGTCCCA AAGGTACACACAAAGCAGATACTCGGGTGACTGTAGTACCTGCTTACAGG CTGCTTACCCTTCAGCCCCTTAGGAGACCACTGCATGGATCTCAGAAGGT CCTGGTCTCTTCTCCACAGTAGATGCATGCATGGTTGCCTACTGGGCACA AACCTGCCTGCCCCATGATGGGCCTGTGAGAAGCTGTAAGAATGTGGCCC AGACACGTTGAGCTGGTGGGTGGAGCTCTTTCTTGCTGGGGCTGGGAGCT GGCGGATCTGAGGATTTACCCTCCTAGTTCTCACCCCAGTGTGCACCTGT CTGGGCACCTCCTCTTTCCTGGGGCCCTACCGCCATTTTTACAGCTCTAC CTTCAGCTTCCCTCCACCCTCCAGGACAAGCTGGGGACCTGAAGAGCACA TTTTAAGAGATGGACATCTGGGCTGGGGATATGATGGCCTCCCTTCTTCT CTC
quality values	Open. Hide. 7 7 7 6 6 6 6 8 13 34 37 20 19 17 14 14 28 30 30 33 33 33 40 43 43 44 30 28 21 20 20 10 13 8 6 6 10 10 34 34 41 28 28 28 28 30 35 57 57 57 36 36 37 50 50 40 40 40 40 40 42 34 43 25 23 24 24 34 32 42 42 41 41 47 54 54 54 54 57 68 50 50 50 50 43 48 57 57 47 41 41 41 41 41 41 57 57 57 47 47 47 57 57 57 57 57 57 57 57 57 47 47 57 57 57 57 47 50 50 50 50 57 57 57 57 57 57 57 50 50 50 50 50 51 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 52 52 52 52 52 57 57 54 54 52 52 52 52 43 43 28 28 23 32 43 43 43 43 47 50 44 47 47 47 42 42 39 39 39 47 47 47 43 43 47 47 47 44 44 44 44 48 47 47 48 57 48 48 48 57 48 48 48 48 48 48 48 48 48 48 48 54 48 48 48 48 46 47 46 46 43 43 46 46 48 48 48 48 48 48 48 48 48 48 48 46 46 48 46 43 43 39 32 32 30 25 20 10 10 8 8 8 8 6 6 8 8 10 10 17 15 15 10 8 8 10 10 8 8 6 6 8 10 10 13 11 10 10 13 13 12 10 8 8 8 8 8 13 11 11 9 10 10 10 10 10 10 10 12 11 12 15 20 15 11 10 10 10 10 9 8 8 8 8 10 10 13 11 11 9 9 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 16 8 8 6 6 10 10 9 9 9 9 10 10 10 10 13 15 23 23 25 11 10 10 8 8 8 11 10 11 12 8 8 8 8 8 8 8 8 6 6 8 8 10 10 10 10 10 10 10 10 12 10 10 8 8 8 8 8 8 8 8 8 6 6 8 8 8 8 14 20 15 12 11 11 13 15 13 11 8 8 8 8 12 8 6 6 6 6 8 10 13 12 9 9 9 9 9 10 10 10 8 8 6 9 10 10 6 7 8 8 8 8 6 6 8 8 7 7 10 11 14 10 9 11 8 13 16 16 13 10 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 9 9 10 9 9 8 10 10 13 12 10 10 9 9 8 8 10 10 8 10 11 11 9 8 8 8 8 8 8 8 8 8 8 8 8 11 9 8 8 10 8 8 8 8 8 8 8 8 8 8 8 10 10 10 13 9 12 9 11 10 10 11 9 15 11 10 10 10 10 10 8 8 8 8 8 8 10 10 10 8 8 8 9 10 10 16 12 11 10 10 10 10 10 10 8 8 8 8 8 11 11 9 9 9 10 10 12 10 9 9 8 8 8 9 10 10 12 10 13 13 8 8 8 8 8 12 13 15 13 11 9 9 12 11 8 12 8 8 8 13 15 11 11 11 10 8 8 8 6 6 8 8 8 10 12 11 12 12 15 12 15 15 10 8 6 6 7 8 8 9 11 11 11 10 9 9 9 8 8 6 6 8 8 9 9 10 9 10 11 13 15 13 13 10 19 12 8 6 6 8 8 8 8 8 8 8 11 10 11 8 8 6 6 6 8 8 7 7 8 8 12 12 10 10 10 12 11 12 14 10 10 9 9 11 10 10 8 8 6 6 6 6 8 8 8 16 13 11 11 10 12 11 8 8 6 6 6 10 10 9 8 8 8 8 8 8 7 6 8 8 6	Open. Hide. 0 3 9 9 9 10 9 8 8 8 8 17 15 17 11 11 9 21 19 28 28 30 48 48 48 48 48 47 47 47 28 30 13 16 13 11 11 15 15 12 11 11 11 19 21 33 36 36 50 50 36 35 35 37 37 42 42 42 36 36 31 23 18 13 18 19 25 31 28 43 48 42 42 47 47 50 50 68 50 50 68 68 50 50 50 48 48 57 50 50 48 50 50 48 46 41 41 41 47 48 47 47 47 57 42 47 47 47 36 38 40 41 41 37 46 57 57 59 59 54 54 54 57 50 50 50 50 57 57 57 57 57 57 57 57 57 57 57 52 52 57 57 57 57 57 57 52 52 52 52 57 50 50 50 50 52 52 50 46 46 57 57 57 57 57 57 52 57 57 57 57 57 57 57 57 57 57 57 57 52 52 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 57 62 62 62 62 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 62 62 62 62 62 62 62 62 62 52 52 52 52 62 62 62 62 62 62 62 54 52 62 43 62 62 62 43 43 62 62 62 62 68 68 62 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 62 62 62 52 45 62 62 62 62 62 62 62 39 39 39 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 43 44 35 43 43 43 43 52 52 57 57 59 57 57 52 57 57 59 59 59 59 57 57 57 57 57 57 57 57 57 57 59 59 57 57 57 59 59 57 57 57 57 57 57 57 57 57 54 54 54 59 44 59 50 50 35 43 43 57 57 57 57 57 59 57 57 57 57 57 52 52 52 52 52 57 57 57 57 57 59 57 48 57 57 57 50 50 43 50 57 57 54 54 57 57 59 59 32 28 23 37 36 39 39 43 43 40 43 44 35 28 28 36 36 43 43 43 47 47 47 42 42 41 30 30 44 44 59 43 43 42 42 43 43 43 48 59 59 59 57 54 48 48 48 42 43 39 28 28 23 23 28 30 22 23 23 29 29 39 35 28 34 32 40 40 59 59 47 47 23 19 8 6 6 8 19 21 41 42 50 59 50 48 41 39 30 30 23 34 28 37 37 39 40 28 24 20 27 27 42 42 31 32 32 34 42 34 39 39 39 43 36 29 24 24 26 26 43 47 48 48 48 47 47 47 41 39 39 37 31 31 37 37 37 34 34 39 36 37 43 29 28 17 17 17 31 37 48 48 48 37 37 37 41 41 37 37 31 25 25 34 30 28 23 30 26 26 26 28 36 43 30 30 22 22 22 28 19 17 9 9 10 10 13 18 15 15 13 26 26 25 17 14 15 13 13 17 25 30 17 13 11 11 17 17 13 19 15 18 18 20 22 13 8 8 8 8 10 12 13 14 12 10 10 10 10 12 18 12 11 12 16 25 22 25 27 23 24 24 24 30 37 24 19 11 9 9 9 21 28 31 32 32 26 28 28 20 20 10 12 12 10

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no078_o01.g1 MSMg01no078_o01.g1 CHROMAT_FILE:
MSMg01no078_o01.g1 PHD_FILE: MSMg01no078_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:20 2005
         (542 letters)



>mm_chr11_55064558_55065499
          Length = 942

 Score =  980 bits (507), Expect = 0.0
 Identities = 534/543 (98%), Gaps = 2/543 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgcgcagaaggtttcaggcaggatcccaccagcagagggggaacaagtcctgaagct 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ttctgcgcagaaggtttcaggcaggatcccaccggcagagggggaacaagtcctgaagct 260

                                                                       
Query: 61  tcaagaacaagacttccagaagatggaagtccatgtgactcaacttccaagaatgttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaagaacaagacttccagaagatggaagtccatgtgactcaacttccaagaatgttctt 320

                                                                       
Query: 121 gttgccagtgcccagaataatgctgacatacgacacttggcatagatgtcccaaaggtac 180
           ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 gttgccagtgcccagaacaatgctgacatatgacacttggcatagatgtcccaaaggtac 380

                                                                       
Query: 181 acacaaagcagatactcgggtgactgtagtacctgcttacaggctgcttacccttcagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 acacaaagcagatactcgggtgactgtagtacctgcttacaggctgcttactcttcagcc 440

                                                                       
Query: 241 ccttaggagaccactgcatggatctcagaaggtcctggtctcttctccacagtagatgca 300
           |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttaggagaccactgcacggatcttagaaggtcctggtctcttctccacagtagatgca 500

                                                                       
Query: 301 tgcatggttgcctactgggcacaaacctgcctgccccatgatgggcctgtgagaagctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcatggttgcctactgggcacaaacctgcctgccccatgatgggcctgtgagaagctgt 560

                                                                       
Query: 361 aagaatgtggcccagacacgttgagctggtgggtggagctctttcttgctggggctggga 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 aagaatgtggcccagacacgttgagctggtggttggagctctttcttgctggggctggga 620

                                                                       
Query: 421 gctggcggatctgagg-atttaccctcctagttctcaccccagtgtgcacctgtctgggc 479
           |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctggcggatctgagggatt-accctcctagttctcaccccagtgtgcacctgtctgggc 679

                                                                       
Query: 480 acctcctctttcctggggccctaccgccatttttacagctctaccttcagcttccctcca 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 acctcctctttcctggggccctaccgccatttttacagctctaccttcagcttccctcca 739

              
Query: 540 ccc 542
           |||
Sbjct: 740 ccc 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information