Query= MSMg01no079_e15.b1 MSMg01no079_e15.b1 CHROMAT_FILE:
MSMg01no079_e15.b1 PHD_FILE: MSMg01no079_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:53 2005
(527 letters)
>mm_chr11_117035221_117036150
Length = 930
Score = 948 bits (490), Expect = 0.0
Identities = 519/532 (97%), Gaps = 8/532 (1%)
Strand = Plus / Minus
Query: 4 ggaattctggggactcttgagacgg-ataaaaatgccagaaccgcccggagagaggctgc 62
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 822 ggaattctggggactcttgagacggtataaaaatgccagaaccgcccggagagaggctgc 763
Query: 63 agcagctgctccggctgcttggaggtatcctgattgcaaagattggatttgctccaagga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 agcagctgctccggctgcttggaggtatcctgattgcaaagattggatttgctccaagga 703
Query: 123 actcagcgcccctagtcagcaggaagtagtctaacgggatcgatgccccctccgccccca 182
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 702 actcagcgcccctagtcagcaggaagtagtctaacgggatcgatgccccgtccgccccca 643
Query: 183 cccccaccccagccttctttctttcctacctagtgttggaggttggaaggaataggatgg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cccccaccccagccttctttctttcctacctagtgttggaggttggaaggaataggatgg 583
Query: 243 agaagagcagtaggggaaaaacccaataaagtatccaaaagtacagataggaccatgaac 302
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 582 agaagagcagtaggggaaaaagccaataaagtaaccaaaagtacagataggaccatgaac 523
Query: 303 caagacaagc---cttccctctgcagcttctgacaactgccagcggagcggagcattagc 359
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 522 caagacaagccttcttccctctgcagcttccgacaactgccagcggagcggagcattagc 463
Query: 360 atcctcagccttaatgcttgtgcttcagtgtacacgtttttctcagggaattctaatttt 419
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 atcctcagtcttaatgcttgtgcttcagtgtacacgtttttctcagggaattctaatttt 403
Query: 420 gtttcattt----aaaaaaaaaaaagagtgctgtggctgagttggaagcttccttagctg 475
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gtttcatttaaaaaaaaaaaaaaaagagtgctgtggctgagttggaagcttccttagctg 343
Query: 476 ggatgcgtgaggccctgggttttcttcccagtgttacataaactgggcatgg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggatgcgtgaggccctgggttttcttcccagtgttacataaactgggcatgg 291
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 930
Length adjustment: 10
Effective length of query: 517
Effective length of database: 920
Effective search space: 475640
Effective search space used: 475640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_e15.g1 MSMg01no079_e15.g1 CHROMAT_FILE:
MSMg01no079_e15.g1 PHD_FILE: MSMg01no079_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:53 2005
(558 letters)
>mm_chr11_116920931_116921890
Length = 960
Score = 1023 bits (529), Expect = 0.0
Identities = 555/569 (97%), Gaps = 11/569 (1%)
Strand = Plus / Plus
Query: 1 caggacagccatggctacacagagaaaccctgcttcgaaacc---------aaaaaaaaa 51
|||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 192 caggacagccatggctacacagagaaaccctgcttcgaaaccaaaaaaaaaaaaaaaaaa 251
Query: 52 aaaaaattattttatagcccctgtttctaaatgaggtcacacacagttcagggtcctagc 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aaaaaattattttatagcccctgtttctaaatgaggtcacacacagttcagggtcctagc 311
Query: 112 agtcaggactccaacctatgcacgttgagtaggagcggacacattagcttataccgttag 171
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 312 agtcaggactccaacctatgcatgttgagtaggagcggacacattagcttataccgttag 371
Query: 172 tgacatcttttccctaaagccagaaggtgctgttggagctgcctccctctgtcactgcac 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tgacatcttttccctaaagccagaaggtgctgttggagctgcctccctctgtcactgcac 431
Query: 232 aaggctctctggaaccaccgaactgggagaacgatgcaccctagcagccaagtggcttgg 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aaggctctctggaaccaccgaactgggagaacgatgcaccctagcagccaagtggcttgg 491
Query: 292 aaaacgcatttaggctcaaacaaaaggcaccaattgaacaaagccagcaagacacggcac 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 492 aaaacgcatttaggctcaaacaaaaggcaccaattgaacaaagccagcaagacacagcac 551
Query: 352 taattggcagccacactttgtttctcccccc-tccagctgcctctggaatcagaaaacaa 410
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 552 taattagcagccacactttgtttctccccccatccagctgcctctggaatcagaaaacaa 611
Query: 411 ccattcgagtgaaagccatgaaattaaaatgctttttaaaaaa-cgggctaatgttctgc 469
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 612 ccattcgagtgaaagccatgaaattaaaatgctttttaaaaaaacgggctaatgttctgc 671
Query: 470 gggaccgtgtttccaagacagcctttgttccgtcttccgggctttctcatcagcagaaaa 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gggaccgtgtttccaagacagcctttgttccgtcttccgggctttctcatcagcagaaaa 731
Query: 530 cactgtcttggattgacaggggcaggaga 558
|||||||||||||||||||||||||||||
Sbjct: 732 cactgtcttggattgacaggggcaggaga 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 960
Length adjustment: 10
Effective length of query: 548
Effective length of database: 950
Effective search space: 520600
Effective search space used: 520600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
