BAC Information

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BAC

Clone NameMSMg01-081H13
Chromosome11 (Build37)
Map Location 13,138,297 - 13,138,638
singlet/doubletsinglet
Overlap genenone
Upstream geneCobl, LOC627244
Downstream geneLOC432535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081H13.T7 (MSMg01no081_h13.b1)MSMg01-081H13.TJ (MSMg01no081_h13.g1)
ACCAG302066AG302067
length724722
length of high quality
(start - end)
344 (44 - 387)232 (70 - 301)
definitionCHROMAT_FILE: MSMg01no081_h13.b1 PHD_FILE: MSMg01no081_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:41 2005CHROMAT_FILE: MSMg01no081_h13.g1 PHD_FILE: MSMg01no081_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTGGATACCTTGAATTTCTCTGACTTGGTTATATCATATTATAAAG
AATCATGTGGGTGATCTCTACAACACCATGTGAATTACAAGCTAAAAGAA
ATGAAATGTAAAAATGAGGAAAGGAATAGGAAAACTGCATATTGTTACTA
TTCCCAAGCAGTCATCAATCACTGTGCTATCCCTGAAAAGAGCAGATCAA
AAGCTGCAGACCCAGAGGATGCTACAAAGAGAGACATTTTTTTTTCATAG
TTTACAGCTTAAACCCACCATTATTCTGAAGAATTCTGGCACCATTCTTA
TGTTTTGTAATTCTCTACAAGTTCATACCTTCTTATCATGTAGACAGTTT
TGTATTTTCATCTACCTTTTATCAGGAAATGATAAAGTTTCAACCAGAGA
AGTTCATCAGATCAGCTTTGTTGTAGATGACCCAGACATATTACTTACTA
TCATATTAGTCTGAGATTCATGCTAATATTCATCTTTCTTCCTTAATATT
GAAATATACTTTTAATACACTAATATCCAAGATGTTTTTATACTGCACAT
TTTAAAAATAATGTCTTCACATCTGTATTTCCTCCCTTTAATATTCTAAG
GAAGAACACATTTTATCTTATTATTTCTTCCTCCCCCAAATATTCCCTAC
AATCATAAAAGTTTATACATATAA
ATGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTAAGCAAATGGATGGATCTGGAGGACATCA
TCCTGAGTGAGGTAACCAAATCACAAAAAAACTCACATGATATGCACTCA
CTGATAAGTGGATATTAGCCCAGAAACTTAGAATACCTAAGATACAATTT
GCAAAACACATGAAACTCAAAAAGAAGGAAGACCAAAGTGTGGATATTTC
ATTCCTCCTTAGGATGGGGAACAAAATACCCAAGGAAGGAGTTACAGAGA
CAAAGTTTGTAGCTGAGACTGAAGGAAGGACCATCCAGAGGCTGTCCTAC
CAGGAAACCATCCATAAACATCCACCAAACCCTGACACTATTGCAAATGC
CAGCAAGATTTTGCAACAAGACCCTGATATTGCTGTCTCTTGTGAGGCTC
TGCTAGTGCCTGGCAAATACATAAGTGAATGGTCACAGACATCTATTGGA
TGTAACACATAGCTGCCACTGTAGGAGCTAGAGAAAGTACCCAAGGAGCT
AAAGGGGTCTGCATTCCTATGTAGGAATAACAATATGAACTAACCCGGAT
CCCCATAATTCGCGTCTCTAACTGCATATATGTGATAAGATGGCCTAACC
GACCATCATTGGGAGTAAAGGCCCTTGTTCTTGTGAATATATATGCTCCT
GGACTGGTTTACCCCACCGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_h13.b1 MSMg01no081_h13.b1 CHROMAT_FILE:
MSMg01no081_h13.b1 PHD_FILE: MSMg01no081_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:41 2005
         (344 letters)



>mm_chr11_13138093_13138838
          Length = 746

 Score =  584 bits (302), Expect = e-171
 Identities = 332/342 (97%), Gaps = 2/342 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttggataccttgaatttctctgacttggttatatcatattataaagaatcatg 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttggacactttgaatttctctgacttggttatatcatattataaagaatcatg 264

                                                                       
Query: 65  tgggtgatctctacaacaccatgtgaattacaagctaaaagaaatgaaatgtaaaaatga 124
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 tgggtgatctctacaacaccatgtgaattagaagctaaaagaaatgaaatgtaaaaatga 324

                                                                       
Query: 125 ggaaaggaataggaaaactgcatattgttactattcccaagcagtcatcaatcactgtgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggaaaggaataggaaaactgcatattgttactattcccaagcagtcatcaatcactgtgc 384

                                                                       
Query: 185 tatccctgaaaagagcagatcaaaagctgcagacccagaggatgctacaaagagagacat 244
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 385 tatccctgaaaagagcagatcaaaagctgcagacccagaggatgctagatagagagacat 444

                                                                       
Query: 245 tttttttt-catagtttacagcttaaacccaccattattctgaagaattctggcaccatt 303
           |||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 tttttttttcagagtttacagcttaaacccaccaatattctgaagaattctggcaccatt 504

                                                     
Query: 304 -cttatgttttgtaattctctacaagttcataccttcttatc 344
            ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 505 tcttatgttttgtaattctccacaagttcataccttcttatc 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 746
Length adjustment: 9
Effective length of query: 335
Effective length of database: 737
Effective search space:   246895
Effective search space used:   246895
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)