BAC Information

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BAC

Clone NameMSMg01-082E23
Chromosome11 (Build37)
Map Location 120,868,629 - 120,868,810
singlet/doubletsinglet
Overlap genenone
Upstream geneAatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d
Downstream geneCd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082E23.T7 (MSMg01no082_e23.b1)MSMg01-082E23.TJ (MSMg01no082_e23.g1)
ACCAG302709AG302710
length705680
length of high quality
(start - end)		182 (69 - 250)236 (73 - 308)
definitionCHROMAT_FILE: MSMg01no082_e23.b1 PHD_FILE: MSMg01no082_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:45 2005CHROMAT_FILE: MSMg01no082_e23.g1 PHD_FILE: MSMg01no082_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXCTATTCCAACAGGATCCGCGGAAT
TCTGTGCTATTCTACAACAAATACTGATATGGAAAGAATTTAAATTATTT
TAGGTTTCAGAATGGTTCCATATTATGTACTTTTCTGGCTTTTTTCCCCT
AGCTTGCTAATAATTATATTTTGTATTATCTTGTTTGAGGTGAGGGTCTG
TTACGCTGCCCAGGTTGGCCTCTACATCCTGGATTCAAATGTTCTTCCTG
TCTCAGACTCAGAGTTCTGTGACTATAGGGTTACCAACCTATGTCTGGTT
CTGATGGTTTCAGCAAGAATACATATTTCTTTTTATCTCGTGATACATTC
CCTGCCTACCTAAACACACCAGGAAAGACCCTGACGGTCAAAGGACTTTG
TCTTGGAGTGTGTGTGTGTGTGTGTCTGTGTGTGTGCGTGTGTGTGTCGT
GTCCCCTCAACACACAACTACTCCCCCCTCCCCCTTTCCCCCCCCCCCTC
CTTTTCAACTACCTTTTACCTCCAATTCCTCTACCCTCATAACACCCCCC
TATCCTTCACTCCCTCCTCACCTTACTTCCTTATCTTCATACTACTCATC
TCTCCCCCCTCCTTCATTCTTCTCTTCTCCCCCCACGCCCCCACCCCTTC
CTCCCCTCCCCTCCCTCCTCACTCTCTCCCCCCCCTCCACTCTTCTCCTC
CCCCT

TTCATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTCTAGCTGTGCCATGTTGAAAGGTCA
CAGCCACTCCAGTGCCCCCTTCTATGACTTTTGATAAGAACAGAGAGTTC
TAAGCCGGGCGTGGTGGCACATGCCTTGAATCCCAGCACCCAGGAGGCAG
AGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTT
CCAGGACAGCCAGGGCTATACTGAGAAACCCTGTCTCGAAAAACAAAAAA
CAAAACANAAGAACAGAGAATTCTGGCTGATAGACTCTTTAAAAGGCCCA
AGAGACATAAGGAGACGGGTATCCTAGGATCTCCGTGCACCTGTGTAGTT
TCTTGAACCTCATACATCTTGCCTCAAACTCCTGTCTTCCCCAGTGTGCT
CAGGTCCTCAGCTCAGGCCTGCCCTAGCCTTTCACTCTCTGTGGCAAAGT
ATCTTTTTACCTACTGGCGAGACTGAATAAGTCAAAGTGGGGTGTCTTGT
CAATGCTCACGTCCAGACCAATGAGCCCTCTCTATCTCTGTCACTCAATG
AATGTAAATACAGTGTGGTCCTGTCCCCCATGCTTTCTTGGACCCTCTTG
CAAGACCTGATCTGTGCCTGTTTTTTCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_e23.b1 MSMg01no082_e23.b1 CHROMAT_FILE:
MSMg01no082_e23.b1 PHD_FILE: MSMg01no082_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:45 2005
         (182 letters)



>mm_chr11_120868429_120869010
          Length = 582

 Score =  337 bits (174), Expect = 3e-97
 Identities = 180/182 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatactgatatggaaagaatttaaattattttaggtttcagaatggttccatattatgt 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatactgatatggaaagaattcaaattattttaggtttcagaatggttccatattatgt 260

                                                                       
Query: 61  acttttctggcttttttcccctagcttgctaataattatattttgtattatcttgtttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttttctggcttttttcccctagcttgctaataattatattttgtattatcttgtttga 320

                                                                       
Query: 121 ggtgagggtctgttacgctgcccaggttggcctctacatcctggattcaaatgttcttcc 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ggtgagggtctgttacgctgcccaggttggcctcaacatcctggattcaaatgttcttcc 380

             
Query: 181 tg 182
           ||
Sbjct: 381 tg 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space:    99876
Effective search space used:    99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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