BAC Information

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BAC

Clone NameMSMg01-082M23
Chromosome11 (Build37)
Map Location 37,881,728 - 38,035,914
singlet/doubletdoublet
Overlap geneLOC276941
Upstream geneLOC100039148
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082M23.T7 (MSMg01no082_m23.b1)MSMg01-082M23.TJ (MSMg01no082_m23.g1)
ACCAG303090AG303091
length670674
length of high quality
(start - end)
370 (42 - 411)411 (72 - 482)
definitionCHROMAT_FILE: MSMg01no082_m23.b1 PHD_FILE: MSMg01no082_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:22 2005CHROMAT_FILE: MSMg01no082_m23.g1 PHD_FILE: MSMg01no082_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,035,556 - 38,035,914)(37,881,728 - 37,882,138)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAAT
TCTTCCTTACCACACTTTGCTAAGCATTTCAAATTACAGGTTTGTAAATA
TTTGCAGATAAGTGATTTTTATTTTGTTATATTTCAATTGCATATTTACA
TTCTGAGAGTGTGTATGTAGATATGAGTGTGCAAGCAATAGGAAAAGTAT
GCATTTAAAGATCACAAGACAATTTACAGAGCAGGCTTTCTCCTAGGTCC
AATTCCGCTGGACCCCAGGATTAAATTTCAGTCATTAGTCTTGGAAGCAA
GGACCTCTGCCTACTGAGCCATCTTGTCAGCCCAAACCATTAAGAGATGG
GGCAGATTAGGCAATGTGCAATCTTCCACAATAAATATGATACATGTCAT
TAATATATAGACATATCAAACCCCTATTGTGTGCATTCATTTGTTTATAT
CCTAACATCTCCATACTGCTAATTCCCAGTATGCACTTCTCTTCTAAGAT
TGAGATCCAACTGCTGCTAGAAACCTGGATTTCTACATTAACCAGGACAC
TAAATATTTTCTTAGCTATTATTACTCATGAAGAAGAACAACGAGGACAA
AGAGATTAACCACTATTCTCCCCCTCTCCACTTCTCTTTCCATCATATAC
ACCCTCCCCTCATCTCCCCA
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACATTTCCTTAGCCTATCTGTCTCAAATG
AGAAATACTGGGGGTGGGATGTGTGTGTAACTTCCTTCCCAAATGTAGTT
GGGAAAGCCTGACTCCAGGGGTACTAAGCCCAGTGTCAAGGAAGCTTCAT
GAACTGTCTCTGAAACTGTATATGAGTCCAATAAGCACCTTGGGCAGCAA
ATTTTAGCTGTTTTATACAAAGGAGTGATTAGAAAGTAAAATATGGAAAA
ATCATCTCTGACCAAGGCACAGTTTGCCATTCTAGGAAACTTGGACAATT
CAATGACATTAGCTCCTATGACACATATCACCTGGAACTGTAGAATCTGT
TAACTGGATGGCTCAATTTCTAGATAGATGCTAGTAGCAGTAGTACAGAT
GTCAAACACATAAGTATCATAAATATCAAAGCAGAATCCAAGGACAATTG
GACTTCCAAATGGATCCACTGCATACGTCAAAATAGAAGTTATTATATTC
ATGTCAATATAGACATATAGACAACTTAAAAAGTAAATTATTTCAGATAT
TCTGTACTGGCTTATATGATAATTATTGATCCCTTATATTTGATAGAAAA
ATGATGGAGTCTTGATTGTCTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_m23.b1 MSMg01no082_m23.b1 CHROMAT_FILE:
MSMg01no082_m23.b1 PHD_FILE: MSMg01no082_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:22 2005
         (370 letters)



>mm_chr11_38035556_38036325
          Length = 770

 Score =  656 bits (339), Expect = 0.0
 Identities = 354/359 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcttccttaccacactttgctaagcatttcaaattacaggtttgtaaatatttgca 65
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gaattcttccttagaacactttgctaagcatttcaaattacaggtttgtaaatatttgca 300

                                                                       
Query: 66  gataagtgatttttattttgttatatttcaattgcatatttacattctgagagtgtgtat 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gataagtgatttttattttgttatatttcaattgcatatttacattctgagagtgtgtat 240

                                                                       
Query: 126 gtagatatgagtgtgcaagcaataggaaaagtatgcatttaaagatcacaagacaattta 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gtagatatgagtgtgcaagcaataggaaaagtatgcatttaaagatcacaagacaattta 180

                                                                       
Query: 186 cagagcaggctttctcctaggtccaattccgctggaccccaggattaaatttcagtcatt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 cagagcaggctttctcctaggtccaattccgctggaccccaggattaaatttcagtcatt 120

                                                                       
Query: 246 agtcttggaagcaaggacctctgcctactgagccatcttgtcagcccaaaccattaagag 305
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 119 agtcttggaagcaaggacctctgcctactgagccatcttgtcagcccaaatcattaagag 60

                                                                      
Query: 306 atggggcagattaggcaatgtgcaatcttccacaataaatatgatacatgtcattaata 364
           ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  atggggcagataatgcaatgtgcaatcttccacaataaatatgatacatgtcattaata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no082_m23.g1 MSMg01no082_m23.g1 CHROMAT_FILE:
MSMg01no082_m23.g1 PHD_FILE: MSMg01no082_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:22 2005
         (411 letters)



>mm_chr11_37881528_37882338
          Length = 811

 Score =  741 bits (383), Expect = 0.0
 Identities = 404/411 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatttccttagcctatctgtctcaaatgagaaatactgggggtgggatgtgtgtgtaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatttccttagcctatctgtctcaaatgagaaatactgggggtgggatgtgtgtgtaac 260

                                                                       
Query: 61  ttccttcccaaatgtagttgggaaagcctgactccaggggtactaagcccagtgtcaagg 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ttccttcccaaatgtagttgggaaagcctgactccaggggtgctaagcccagtgtcaagg 320

                                                                       
Query: 121 aagcttcatgaactgtctctgaaactgtatatgagtccaataagcaccttgggcagcaaa 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 aagcttcatgaactgtctctgaaactgtatatgagtccaatcagcaccttgggcagcaaa 380

                                                                       
Query: 181 ttttagctgttttatacaaaggagtgattagaaagtaaaatatggaaaaatcatctctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttagctgttttatacaaaggagtgattagaaagtaaaatatggaaaaatcatctctga 440

                                                                       
Query: 241 ccaaggcacagtttgccattctaggaaacttggacaattcaatgacattagctcctatga 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 ccaaggcacagtttgccattctaggaaacttggacaagtcaatgacattagctcctatga 500

                                                                       
Query: 301 cacatatcacctggaactgtagaatctgttaactggatggctcaatttctagatagatgc 360
           || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 catatatcacctggaactgtagaatctgttaactggatggttcaatttctagatagatgc 560

                                                              
Query: 361 tagtagcagtagtacagatgtcaaacacataagtatcataaatatcaaagc 411
           ||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 561 tagtagcagtagtgcagatgtcaaacacataagtatcataaacatcaaagc 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)