Query= MSMg01no083_m04.b1 MSMg01no083_m04.b1 CHROMAT_FILE:
MSMg01no083_m04.b1 PHD_FILE: MSMg01no083_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:35 2005
(629 letters)
>mm_chr11_29974773_29975801
Length = 1029
Score = 1178 bits (609), Expect = 0.0
Identities = 622/627 (99%), Gaps = 2/627 (0%)
Strand = Plus / Plus
Query: 5 gaattccatgccccagttgagaccttgtctcaaaatgcaagatggacaagtcttaagaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattccatgccccagttgagaccttgtctcaaaatgcaagatggacaagtcttaagaag 262
Query: 65 taacataggagcatgatgttggacctttacgcagagttccatatacatgtaccccataca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 263 taacataggagcatgatgttggacctttacgcagagttccatatacatgtaccccgtaca 322
Query: 125 tactgatatggacacagatgtactcatacacacacatatacacaattatacacaggaggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tactgatatggacacagatgtactcatacacacacatatacacaattatacacaggaggc 382
Query: 185 acagtactgtcatctcttcttttctgtgttttaaaataaggtctccctacaaaaa--ctg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 383 acagtactgtcatctcttcttttctgtgttttaaaataaggtctccctacaaaaactctg 442
Query: 243 gctgttctagagacagctgtgtagatcacgttggcctctgaactcacagagattcaactt 302
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 443 gctgttctagagacagctgtgtagaccacgttggcctctgaactcacagagattcaactt 502
Query: 303 catactcacaaagattcacttgcctctacctccctgtacttggaataaaggtgtgaacca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 catactcacaaagattcacttgcctctacctccctgtacttggaataaaggtgtgaacca 562
Query: 363 ccttacctagctgctgtcattaaattgatggtaacacaaagatatcaaaggcaagtgatt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ccttacctagctgctgtcattaaattgatggtaacacaaagatatcaaaggcaagtgatt 622
Query: 423 gtgtttagcttaagaaaaattggaaagtagttatctaaatgttttgatcccctattattt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gtgtttagcttaagaaaaattggaaagtagttatctaaatgttttgatcccctattattt 682
Query: 483 gtcattaaaaattctcattttagaattttttctactagaaaaaaatctccataaaagtga 542
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 683 gtcattaaaaattctcattttagaattttttctaccagaaaaaaatctccataaaagtga 742
Query: 543 aatatttgcttctgctgataaaacgtgagcatagagtgaaacaaaagttaagtcaggagt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aatatttgcttctgctgataaaacgtgagcatagagtgaaacaaaagttaagtcaggagt 802
Query: 603 gtgtgatactaaaacaggacttgacct 629
|||||||||||||||||||||||||||
Sbjct: 803 gtgtgatactaaaacaggacttgacct 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no083_m04.g1 MSMg01no083_m04.g1 CHROMAT_FILE:
MSMg01no083_m04.g1 PHD_FILE: MSMg01no083_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:35 2005
(411 letters)
>mm_chr11_30124339_30125149
Length = 811
Score = 777 bits (402), Expect = 0.0
Identities = 411/418 (98%), Gaps = 7/418 (1%)
Strand = Plus / Minus
Query: 1 cctagaactgtgtttcagacagttgtggactgctgatgttagtgctaggaactgaaccta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cctagaactgtgtttcagacagttgtggactgctgatgttagtgctaggaactgaaccta 398
Query: 61 aggttcaggaccagaaacttcctgtaattgctggaccattttcccaacctcaataagtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aggttcaggaccagaaacttcctgtaattgctggaccattttcccaacctcaataagtcc 338
Query: 121 ttaagctatgatgacaagactggctgaatgttttaatatagaagtgactaagccactggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttaagctatgatgacaagactggctgaatgttttaatatagaagtgactaagccactggg 278
Query: 181 tttcttgctggcatctttttaagggtaatttcactccttatagaacctggctgaatttgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tttcttgctggcatctttttaagggtaatttcactccttatagaacctggctgaatttgc 218
Query: 241 ttaccttaaaaaaaaaa-------caagatttgtttcaagtaatatgcatatgccaattc 293
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 217 ttaccttaaaaaaaaaaaaaaaaacaagatttgtttcaagtaatatgcatatgccaattc 158
Query: 294 ccagtggccctttgtatctggtaggaaagtgatctctgaacattgggaatgaaggttttt 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 ccagtggccctttgtatctggtaggaaagtgatctctgaacattgggaatgaaggttttt 98
Query: 354 gcagttgctttcattaggatattgtaggcagaggatggtcaacccttcagttgtcctc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 gcagttgctttcattaggatattgtaggcagaggatggtcaacccttcagttgtcctc 40
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space: 322404
Effective search space used: 322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
