BAC Information

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BAC

Clone NameMSMg01-083P16
Chromosome11 (Build37)
Map Location 70,599,096 - 70,599,342
singlet/doubletsinglet
Overlap genenone
Upstream geneChrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3
Downstream geneA430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik, Wscd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083P16.T7 (MSMg01no083_p16.b1)MSMg01-083P16.TJ (MSMg01no083_p16.g1)
ACCAG303956AG303957
length725734
length of high quality
(start - end)		277 (73 - 349)247 (71 - 317)
definitionCHROMAT_FILE: MSMg01no083_p16.b1 PHD_FILE: MSMg01no083_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:52 2005CHROMAT_FILE: MSMg01no083_p16.g1 PHD_FILE: MSMg01no083_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAATTTGCGGCGCTATACGACTCCTAAATCCTGCAGGGGCGCGGAATTC
TACCCATGACATAGAATTTTGCCAAGGGGTATTGACTTTTGGCAAATGCT
TTTTCATCTATCTATTCAATAATCACTCTATGGCTTTTGTCCTTTATTTC
TCGTGATGGGGTCACCTATATTTGTGTGAACCATTCTTGCACCTCTGAAT
GAATCCCACTTAGCAGGTGAATAATCTTTGTTAATATGCCACTGAATTTT
GCTCTGTATTAGCTTCCTGATGATTTCTGCATCTGTGTTCAAGAGTAATA
GTTTAGCTTTTTTCCTGATTTTTTGAGACAGGATCTCACTATATTGCCCT
TGTACTTTCCGGCCTCCACCTACTTGTGCCTAGATGCTGGGATTACTGGC
ATTTAGCACCATGTCAGGCTTTTTTCTTGTGTCCAAGTCTGGTTTAGACA
ATAGAGTAATGATAGTATTACAGAGAGTACTTATTTAAGAAGTCTTTTCC
TAATTTTATAGGAGTTTTAGTATAACTGCATTAGTCCTGCAAAACTGTAA
TTATCCTTTTGAAACTTGATGTAACGTATCATTGTATTTGTCAGATCCTG
GTCTTTTATACTATGATAGACTTATTGATTCAAACTTCTTACTGGTATAT
TTCTTTTTTTTATTTCCACTTAATTCAATCTTGATAATTTTTATGCATTT
ATGTATTTTACTTCTCTCTTTTGTC

ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGAGAGTGATCCTGTCCAAAACGCATCCT
AGTCACTATTTAATTAAAACTTGCTTCAAATTTGGCTCATAATTATGGAA
CTGGTTTTTCTTTTTTGTCTTCTAAATCTCAGGATTATCAAGAGCCCTGT
AAGAGAAAGGCTATTTGCAGCATTCAGGCACTGTGCCTAAATCCAGCGCT
CTAACACCTCTGGAACTGTGGCTGAAACAGAGCAAATGGCAAAGAGCAGG
CTTGTGGCACAGTGACACTTTTCGCTTAGCTGTCTGCAGCTGTAACCTCT
GGTTCCTTTGGTGACAAAGCCCACCTCCAGCCAGAAAGGGTGGAAATGGT
ACTTTCACCCCATCTCTCCTATAGCACATTGTGACATATGTGATGTATGT
GACATTGTCTGAATATTTGTTTGTGTTAGGTCCAAAGCAGGGTTCCCCCC
CAAATGGCAGCGCTGGTGACAGTGTTCTTAACAGAAGTGCTCTCGATTGT
TAGAACTCGAGGGTTCGTTGCTGGGAAAACAGATTTCAAAACTTTACTAG
GAAAGGCCTTACTCACTTCTCTTTTCCAACCCCAGGATCTTTACCTCAGG
TAAGGGCATTCTCTGTCTGTGACAGCCTCCCAAAATTAAAGCTCCTTGAT
AAAATCCAAGTTCTTCTGAAGCCTGTAATTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_p16.g1 MSMg01no083_p16.g1 CHROMAT_FILE:
MSMg01no083_p16.g1 PHD_FILE: MSMg01no083_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:52 2005
         (247 letters)



>mm_chr11_70598896_70599542
          Length = 647

 Score =  455 bits (235), Expect = e-132
 Identities = 244/247 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagagtgatcctgtccaaaacgcatcctagtcactatttaattaaaacttgcttcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagagtgatcctgtccaaaacgcatcctagtcactatttaattaaaacttgcttcaaa 260

                                                                       
Query: 61  tttggctcataattatggaactggtttttcttttttgtcttctaaatctcaggattatca 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttggctcaaaattatggaactggtttttcttttttgtcttctaaatctcaggattatca 320

                                                                       
Query: 121 agagccctgtaagagaaaggctatttgcagcattcaggcactgtgcctaaatccagcgct 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 321 agagccctgtaagagaaaggctatttgcagcattcgggcactgtgcctaaacccagcgct 380

                                                                       
Query: 181 ctaacacctctggaactgtggctgaaacagagcaaatggcaaagagcaggcttgtggcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaacacctctggaactgtggctgaaacagagcaaatggcaaagagcaggcttgtggcac 440

                  
Query: 241 agtgaca 247
           |||||||
Sbjct: 441 agtgaca 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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