Query= MSMg01no084_l03.b1 MSMg01no084_l03.b1 CHROMAT_FILE:
MSMg01no084_l03.b1 PHD_FILE: MSMg01no084_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:47 2005
(583 letters)
>mm_chr11_83281027_83282009
Length = 983
Score = 1004 bits (519), Expect = 0.0
Identities = 562/585 (96%), Gaps = 19/585 (3%)
Strand = Plus / Plus
Query: 4 ggaattcttatctatgc--tcccattacacacaggtttcccccatctctcatatatatac 61
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 213 ggaattcttatctatgcattc--attacacacaggtttcccccatctctcatatatatac 270
Query: 62 acatacatacatatacacacacacatatacatgtatgtgtatatatatacatacatacat 121
||||||||||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct: 271 acatacatacatatacacacaca--tatgcatgtat------atatatacatacata--- 319
Query: 122 atggcatactgttggggctagatgggt---taagtggttaagagtacttgttgcacttcc 178
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 320 -tggcatactgttggggctagatgggtagattagtggttaagagtacttgttgcacttcc 378
Query: 179 acaggacctggtttcagttctcagcacccacactggtagttcccaatcatctctaattcc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acaggacctggtttcagttctcagcacccacactggtagttcccaatcatctctaattcc 438
Query: 239 ccaggtccaggggatctaatgccctcttctgacctctgcaggcatcaggcatgtatgtga 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ccaggtccaggggatctaatgccctcttctgacctctgcaggcatcaggcatgtatgtga 498
Query: 299 tgcacaagcatatatgcaggcaaaacactcaatatatatcaaataagaataaatatgctt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgcacaagcatatatgcaggcaaaacactcaatatatatcaaataagaataaatatgctt 558
Query: 359 aaattttttatgactagtgttttaagtattggggtgggtgctgtaggttcagagagagat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaattttttatgactagtgttttaagtattggggtgggtgctgtaggttcagagagagat 618
Query: 419 atgccatatattcacataacaaactaaaaaactggaaagccttgaaagccacagcttctc 478
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 619 atgccatatattcacataacaaactaaaaagctggaaagccttgaaagccacagcttctc 678
Query: 479 actgtggcctgggtttgaccatgctttgagaaattactttgcttggcgtctcctcatgag 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 actgtggcctgggtttgaccatgctttgagaaattactttgcttggcgtctcctcatgag 738
Query: 539 tcctgtagtccactgtgttttctaaacagcagccagagaaatcct 583
|||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 739 tcctgtagtccactgtgttttcaaaacagcagccagagaaatcct 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no084_l03.g1 MSMg01no084_l03.g1 CHROMAT_FILE:
MSMg01no084_l03.g1 PHD_FILE: MSMg01no084_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:48 2005
(559 letters)
>mm_chr11_83433358_83434316
Length = 959
Score = 1081 bits (559), Expect = 0.0
Identities = 559/559 (100%)
Strand = Plus / Minus
Query: 1 ttaagttgcttatttcccaaaacaccttacacctcatagtcacacatctgcttctccctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ttaagttgcttatttcccaaaacaccttacacctcatagtcacacatctgcttctccctg 629
Query: 61 atgtctctgggccagccagcatcacctctctcatctgcacccatccacagcttgcaacta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atgtctctgggccagccagcatcacctctctcatctgcacccatccacagcttgcaacta 569
Query: 121 cgtgagtacctctctctcaagttctttggctggagattaaccctagatttaaacacttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cgtgagtacctctctctcaagttctttggctggagattaaccctagatttaaacacttcc 509
Query: 181 attacatgccatggcttttaagacagaagcaaataatttagtctgccctctgctttctag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 attacatgccatggcttttaagacagaagcaaataatttagtctgccctctgctttctag 449
Query: 241 tgcagtgtgacctttaattttatctccatctcctctgccccattctcccaatcctccaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tgcagtgtgacctttaattttatctccatctcctctgccccattctcccaatcctccaag 389
Query: 301 caagccaaatttagttcccaaattcaccagctttcttgtctgaatctctgaataagctgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 caagccaaatttagttcccaaattcaccagctttcttgtctgaatctctgaataagctgt 329
Query: 361 ttcctagtaaggagtaatcgtttctatcagttaaaataatgattcccgtatggactttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttcctagtaaggagtaatcgtttctatcagttaaaataatgattcccgtatggactttct 269
Query: 421 aaaaagtatcaagattgcttttaaattatttatgaggtaaacaataagctggcacagtta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aaaaagtatcaagattgcttttaaattatttatgaggtaaacaataagctggcacagtta 209
Query: 481 attaaaagaaggatcctcccataatcagcttccaaacgctgacaccattgcatacactag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 attaaaagaaggatcctcccataatcagcttccaaacgctgacaccattgcatacactag 149
Query: 541 caagatttcgctgaaagga 559
|||||||||||||||||||
Sbjct: 148 caagatttcgctgaaagga 130
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
