BAC Information

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BAC

Clone NameMSMg01-084L11
Chromosome11 (Build37)
Map Location 94,017,059 - 94,017,514
singlet/doubletsinglet
Overlap geneLOC100039440
Upstream geneCar10, LOC629636, Utp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431
Downstream geneTob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084L11.T7 (MSMg01no084_l11.b1)MSMg01-084L11.TJ (MSMg01no084_l11.g1)
ACCAG304495AG304496
length732707
length of high quality
(start - end)
459 (41 - 499)392 (70 - 461)
definitionCHROMAT_FILE: MSMg01no084_l11.b1 PHD_FILE: MSMg01no084_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:49 2005CHROMAT_FILE: MSMg01no084_l11.g1 PHD_FILE: MSMg01no084_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGAATTAAAGGCGTGCGC
CACCTCTACCCAGCTTTAAAAGTTTTTAGACCCATGACAAGAAAACCTAA
AAAAGAATCCGTAAGCCATGGATATGACTTGCTATGGTTTCCCATATTGT
TATTCGCCTTCACCGTGGGAAAACCCAGTTTCCTTGTATTTGACTGAAGG
AAGGCTTCACATCTTTATCTTTAAAAAACTTGTTAGGAGCTGGAGAGTTG
GCTTAGTGGTTAAGGGCAATGGCTGCTCTTCTAGGAGACCCAGGTTCGAT
TCCCAGTACCCAGATGGCAGCTCTGTATGTAACTCTAATTCCAGGAGATT
CGACATGCTTTTCTGAAGGCACCAGGCATGCGGGCTGTACTGAAGCATAC
AAGCAGGTAAACACTAATACGCATAAAGTAGAAATATATTTATTGGTGTG
GGTGTGGGTCACAGCACGTGCGGTGAAGTTTGAAGTTTCCCTTGTATCTG
TTCATCTCCTTCCTGCTTTCCATGGTTCCTGGTCAACTGAATTCATATTT
GCTGCCCTCTGTTTAACATATCCCCTTTTAGTCTATCCAATAGAAGTTCC
TCTTATCCATCTTGCTTTCAATTTCACGTTGTCTTATACACATTTAACCC
CATCCCCCTTATTGTTCTCTATTCTCCTTCTT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTATAACAAGAATTCATACAGTAGATATTGGT
GGCACAGATCAGGTTGTGGTAGAGAGAATGAAAGGTGGTCAGATATGAGA
TAGATTTGCTGATAGATGTGATAAGAGCCATTAGAGAAGAGTCAAAGTTG
ATTCTAAAGTTTTAGACTTGGATACAGTCATTTAGTGAACCAGAGACCTG
GAGAGGATCAGGTTTCAACAAGCTCAGTTTAAGGTGTTTATTAGAATCCA
AATTATGTTGCCCAGAAAGTATACTGTGGACATGCAAATTTGAAGTTCAG
GTTTGGACTAGAGATAGAAAATTGGAAGTTGTCAGCATAGTTATTATCTC
AAGTAATGGAAATAGCTGAGTTCACAAAGAGTGAATGAGGGGTGGGGAGA
TGGCTGCCTGGTAAAGAGGCTGCTGCATGAGGGTAAGGATCTGAGTTTGA
ATCCTAGGAGCCCATGTAAGACCCATGTAAGGTGTACTGGTTGGCAATTC
CAGTGTTCCTATAGTGAGATGGGTTCCCACACAGGAGACTCACTGGAGAC
TTGTGGTCCAGCTCGATGGTCACAAGCAGTAGTGAACAACATATAGACTT
CTTGACAATACCTGAAGTTGTCCTCTGATTTACCCAGGTACACCTGCCCT
TTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_l11.b1 MSMg01no084_l11.b1 CHROMAT_FILE:
MSMg01no084_l11.b1 PHD_FILE: MSMg01no084_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:49 2005
         (459 letters)



>mm_chr11_94016986_94017844
          Length = 859

 Score =  835 bits (432), Expect = 0.0
 Identities = 450/456 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagaaatctgcctgcctctgcctcccaagtgctggaattaaaggcgtgcgccac 63
           |||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 529 ggaattcagaaacccgcctgcctctgcctcccaagtgctggaattaaaggcatgcgccac 470

                                                                       
Query: 64  ctctacccagctttaaaagtttttagacccatgacaagaaaacctaaaaaagaatccgta 123
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ctctacccagcttaaaaagtttttagacccatgacaagaaaacctaaaaaagaatccgta 410

                                                                       
Query: 124 agccatggatatgacttgctatggtttcccatattgttattcgccttcaccgtgggaaaa 183
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 agccatggatatgacttgcgatggtttcccatattgttattcgccttcaccgtgggaaaa 350

                                                                       
Query: 184 cccagtttccttgtatttgactgaaggaaggcttcacatctttatctttaaaaaacttgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cccagtttccttgtatttgactgaaggaaggcttcacatctttatctttaaaaaacttgt 290

                                                                       
Query: 244 taggagctggagagttggcttagtggttaagggcaatggctgctcttctaggagacccag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 taggagctggagagttggcttagtggttaagggcaatggctgctcttctaggagacccag 230

                                                                       
Query: 304 gttcgattcccagtacccagatggcagctctgtatgtaactctaattccaggagattcga 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 229 gttcgattcccagtacccagatggcagctctgtatgtaactctaattccaggggattcga 170

                                                                       
Query: 364 catgcttttctgaaggcaccaggcatgcgggctgtactgaagcatacaagcaggtaaaca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 catgcttttctgaaggcaccaggcatgcgggctgtactgaagcatacaagcaggtaaaca 110

                                               
Query: 424 ctaatacgcataaagtagaaatatatttattggtgt 459
           ||||||||||||||||||||||||||||||||||||
Sbjct: 109 ctaatacgcataaagtagaaatatatttattggtgt 74


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)