BAC Information

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BAC

Clone NameMSMg01-084N09
Chromosome11 (Build37)
Map Location 10,268,131 - 10,268,499
singlet/doubletsinglet
Overlap genenone
Upstream geneAbca13, LOC665435, LOC382483
Downstream geneVwc2, Zpbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084N09.T7 (MSMg01no084_n09.b1)MSMg01-084N09.TJ (MSMg01no084_n09.g1)
ACCAG304580AG304581
length691692
length of high quality
(start - end)
377 (45 - 421)406 (75 - 480)
definitionCHROMAT_FILE: MSMg01no084_n09.b1 PHD_FILE: MSMg01no084_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:58 2005CHROMAT_FILE: MSMg01no084_n09.g1 PHD_FILE: MSMg01no084_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGACTCTACCTCCTTAATATTTTCTAATTTTCTGAAAAATCTTTT
CTTTACTTTTAAGAAGTTTTGGTTTTTGCTTTACCAGAAAAGCAAAGCTG
AACTCACTGATAGTATGCATATTGCGTGTGTGGAAATCATAAATGTGATC
ATTCATAGGAATAACACAATGGAAGGTGACATAGAAAACCATTTAGTTCT
TTAATATCTGGTGACAGGAAGTAAGTATGTGATCGCTTCCCAGTCAAATG
AACCGAAACAAAGCATTAAACTGAACTGATTGGCAGTAGCCACTATCTTT
GAAAGATTTGAAGGATCATTACTATTGAAAACAAAGGCTCTAATTTTCCA
TCTGTTCTAAAAGATCCACAACTCTTAGATAATTCTGTAATGTGAGAGGA
TGAGAGTACCCTCTAAGACTGTGGCCAGTGAACCATTTTAAAAGACTCAC
TTGCAATTACCATTGATATTGAGGCAATTAAACTCATGATAAACGATTCT
TCACATAATAAGCTACTTGGAATCATCATATGGTTCCCAGGTGATTCTTA
GGCGAGCACAAGTTTAAGGACAACAATCTAGATATTTGACTAGCTAATAC
CTACAATTACACTAATCCGTCCTGACTTTCCCTTGTGTATT
GATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAA
GGACACATGCTCTACTATGCTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAATCTATATGCCCCTCAACATAGGAATGGATACATAAAATG
TGTTATATCTACACAATGGAGTATTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGCG
AGGTAACACATTCACAAAGAAACTCACACAATATGCATTCCCTGATAATT
GGATATTACCCTCTAACCTAGTATACCCAAGATATTTTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_n09.b1 MSMg01no084_n09.b1 CHROMAT_FILE:
MSMg01no084_n09.b1 PHD_FILE: MSMg01no084_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:58 2005
         (377 letters)



>mm_chr11_10267927_10268702
          Length = 776

 Score =  685 bits (354), Expect = 0.0
 Identities = 366/370 (98%), Gaps = 1/370 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgactctacctccttaatattttctaattttctgaaaaatcttttctttactt 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gaattcttgactcta-atccttaatattttctaattttctgaaaaatcttttctttactt 515

                                                                       
Query: 65  ttaagaagttttggtttttgctttaccagaaaagcaaagctgaactcactgatagtatgc 124
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 514 ttaagaagttttggtttttgctttaccagaaaagcaaaactgaactcactgatagtatgc 455

                                                                       
Query: 125 atattgcgtgtgtggaaatcataaatgtgatcattcataggaataacacaatggaaggtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 atattgcgtgtgtggaaatcataaatgtgatcattcataggaataacacaatggaaggtg 395

                                                                       
Query: 185 acatagaaaaccatttagttctttaatatctggtgacaggaagtaagtatgtgatcgctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 acatagaaaaccatttagttctttaatatctggtgacaggaagtaagtatgtgatcgctt 335

                                                                       
Query: 245 cccagtcaaatgaaccgaaacaaagcattaaactgaactgattggcagtagccactatct 304
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cccagtcaaatgaactgaaacaaagcattaaactgaactgattggcagtagccactatct 275

                                                                       
Query: 305 ttgaaagatttgaaggatcattactattgaaaacaaaggctctaattttccatctgttct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttgaaagatttgaaggatcattactattgaaaacaaaggctctaattttccatctgttct 215

                     
Query: 365 aaaagatcca 374
           ||||||||||
Sbjct: 214 aaaagatcca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 776
Length adjustment: 9
Effective length of query: 368
Effective length of database: 767
Effective search space:   282256
Effective search space used:   282256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)