BAC Information

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BAC

Clone NameMSMg01-087B19
Chromosome11 (Build37)
Map Location 86,544,806 - 86,545,303
singlet/doubletsinglet
Overlap geneCltc
Upstream geneBcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2
Downstream geneDhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087B19.T7 (MSMg01no087_b19.b1)MSMg01-087B19.TJ (MSMg01no087_b19.g1)
ACCAG306234AG306235
length716808
length of high quality
(start - end)		502 (41 - 542)---
definitionCHROMAT_FILE: MSMg01no087_b19.b1 PHD_FILE: MSMg01no087_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:06 2005CHROMAT_FILE: MSMg01no087_b19.g1 PHD_FILE: MSMg01no087_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGCACTCTCAGGACTAAATGAAAGGCACAGAGAATCTCTTGAGCCTCTT
AAGTGCTAGGATTCAGATAGCTGCAAGCTATCATTCTTAAAAACTACTTA
CTAGGGTGATTGGGGTGGAGAAATAGAAAACAAAGATGAGGTTTGTCTTT
TTCTGACTTGGGGAGAGAGAGGAGAGTAGTCAAGTTCTAGTAGCGAGTAG
AGCCAGTATTCCATTTTAGAGGCAGCAAACAGTTGTTTTCCATGTCTCTC
AAAGCTAGCATGCAAGCCATGTGACTCTGCCTATACTAGACTTCAAAGAG
GGAACTCAGGACATCACGTTATTTTAAGACTGAGGGAGAGTCTACTCTGG
CAGTGAAAATAGCAGCAAACTGAGTCACCAGACCCCAGCAGTGCAGGCCT
ATCAGAAGCACAGGTCACAGATCTACAGCGTGACTTCTCCCTGGAAGCCT
AGCATTTTTGCTTATTTCTCCTTTCCCAAGTTTAGTTATACCGCTGTCCT
AGCTACTGCCAGGTACCCATTACCTGTCAGTAAGTTTTTTATATTCCAAT
CAACCAGACCTTGTTTCTGTTGTCCTCAACTAACAATTTCTATGCCCAAT
ACTTCCATCCGCCCAGTTCACTTCTTCACACTGTCTCGCATCGTATCCTC
TCTTATCTAAGAGACC

CGATAGAGAGAGGCTAGGTGATACATTTTCAAAAAGGGTGTTGAATAATA
AAATTTCCCAAAAAAGGGGGGNGGGGGAGGTGTGGAGTGTTGTCGGGTGG
GGGTACATAGTAGTCCCCCTATCTTATTTTGCCGCGCCCCGCCCCTTCTC
TGCTCGTTGTTTTCTCCCCCTATTCTGTACCCGAAGTGAGAGACAAGTCC
GAATTGATAGTTTAAATCAATAAAGAAAAAAGAGAGAAGAGATAGCGTAC
ATGTTTCTCCCTGGGTGCTGGCCCGGGTGGCGCGTCCCCCCTATTGTAGA
TTGCAGATCCGCCGCGCGTTGCCGTTGTTTTTTTTGCTCGGACGGGAGGC
GTGTCGCTGTTTATAGCGCGGTTTCTTTTTTCACCCCCCACCCCTCGCGG
TACTAAAAAAATCAAAATAATCCGGCGATTCGTTTCCCCTCCTATACGGC
CGCTCAGTTACTTTTACTGTTGTGCGACGGCCCAAAGTTATCCCGGATCC
CTTCGCGGTTTGAACTACAGTACGATACAAACCTGTGGTGTATATTATTC
CCATTATATAATCGGAAGCGGTGTAGGAAGTGTATATTCCCTTGCTATAT
CCGAGTGGTATTGTGCGGGGCCGTCTTGCTTTTTCGTCCGTCGTGCCCAC
CCCTCTCTATGTTAACCCCACCCATTTATTGTCCCTCCCGCGTGATGATT
TCTAGGGCTACGTCACGGTTTTGTATTGCGGTGTGTGTTTTGCGTTATAC
CTCCGTTTCTCCCGGGTCCCGCCCATATTATATTCACTCCATCGTTCGTT
ACCGCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_b19.b1 MSMg01no087_b19.b1 CHROMAT_FILE:
MSMg01no087_b19.b1 PHD_FILE: MSMg01no087_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:06 2005
         (502 letters)



>mm_chr11_86544603_86545504
          Length = 902

 Score =  932 bits (482), Expect = 0.0
 Identities = 494/498 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagcactctcaggactaaatgaaaggcacagagaatctcttgagcctcttaag 63
           |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 204 ggaattccagcactcttaggactaaatgaaaggcacagagaatcacttgagcctcttaag 263

                                                                       
Query: 64  tgctaggattcagatagctgcaagctatcattcttaaaaactacttactagggtgattgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgctaggattcagatagctgcaagctatcattcttaaaaactacttactagggtgattgg 323

                                                                       
Query: 124 ggtggagaaatagaaaacaaagatgaggtttgtctttttctgacttggggagagagagga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggtggagaaatagaaaacaaagatgaggtttgtctttttctgacttggggagagagagga 383

                                                                       
Query: 184 gagtagtcaagttctagtagcgagtagagccagtattccattttagaggcagcaaacagt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagtagtcaagttctagtagcgagtagagccagtattccattttagaggcagcaaacagt 443

                                                                       
Query: 244 tgttttccatgtctctcaaagctagcatgcaagccatgtgactctgcctatactagactt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgttttccatgtctctcaaagctagcatgcaagccatgtgactctgcctatactagactt 503

                                                                       
Query: 304 caaagagggaactcaggacatcacgttattttaagactgagggagagtctactctggcag 363
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 504 caaagagggaactcaggacatcaggttattttaagactgagggagagtctactctggcag 563

                                                                       
Query: 364 tgaaaatagcagcaaactgagtcaccagaccccagcagtgcaggcctatcagaagcacag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgaaaatagcagcaaactgagtcaccagaccccagcagtgcaggcctatcagaagcacag 623

                                                                       
Query: 424 gtcacagatctacagcgtgacttctccctggaagcctagcatttttgcttatttctcctt 483
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 624 gtcacagatctacagcgtgacttctgcctggaagcctagcatttttgcttatttctcctt 683

                             
Query: 484 tcccaagtttagttatac 501
           ||||||||||||||||||
Sbjct: 684 tcccaagtttagttatac 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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