BAC Information

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BAC

Clone NameMSMg01-088G24
Chromosome11 (Build37)
Map Location 84,973,401 - 84,973,648
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000000997, Acaca, LOC100043671, Aatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848
Downstream gene1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d, Bcas3, Tbx2, Tbx4, LOC668751, Brip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088G24.T7 (MSMg01no088_g24.b1)MSMg01-088G24.TJ (MSMg01no088_g24.g1)
ACCAG307193AG307194
length772695
length of high quality
(start - end)
239 (141 - 379)175 (125 - 299)
definitionCHROMAT_FILE: MSMg01no088_g24.b1 PHD_FILE: MSMg01no088_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:54 2005CHROMAT_FILE: MSMg01no088_g24.g1 PHD_FILE: MSMg01no088_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCNCCNCCCC
CCNCCCCCCCCCNCCNACCCCCTCTAAATTTGCGGCGCTAAACGACTCCT
ATTCCGAGAGGTCCGCGGAATTCTCAAGTTACCGAACGGTCACAGACTAA
GCTTATAAACAAAGTCTGGTTTCCTTTGGAAAGTGGCCCCAAAAAAAAAA
AAAAAAACTTTCCTTGAATCAAATGGCTACAGAAACACTTGTCCCCAAAC
ACATAACTCTGTCAAGTCCTTGTGTGTGTTCCTTTCTTTCTTCCTTTAGC
CTTCTCACTTCTCTTCCATAACCCATCTTTCTGCTATAACCCATGGGAGT
AAATCCTTTACCTAGAGACAAAATTAAGACTCAGCTTGGGACTTCCTTCC
TTGATATTCTTATTATTTTCTGATCTGGTTTCTCCACTCTAGCGAAAATA
CAGAGATTCCACTTCCTCTACACAATTCTTCTCACCACACCATCTCTGTA
ATTTAATGATGTCATTGCCTTCCACCAGAAAAGTGATCATGTTCTCCCCA
TCCTATCCCACCATATTTGGCTGCTCTGCGCTTTATTTTAGAAAAACATC
CTTGGCTAACACCTCTTAACTTCCATGTGGCTGTGCTTCCCCCAGACCTT
TCGAACCCATCCAATGTGAAGGCACCAGGACCCTCACATATTCCCAGTGG
GCTACTACCGTGGTATCACAACAAATTCCAACGCATTTATTAAACTTTCC
AACCACTCTAAACTCCCCCAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCAGGACAGCCAGGGCTACACAGAGAAAGCCTGTCTCATAAAATTAA
CCCCAAAAAATAAAAAAACTTAGCACTGAGAAGCAGAGGCAGGCAGATCT
CTGAGTTCGAGACCAGCCTGGACTACAGAGTTCCAGGACAGGCAGGGCTA
CACAGAGAAAACCTGTCTCAAAAATACAAAAAAGCAAAGCCAAACAAACA
AATAACCCCCCCACACACACACACACACAAGCAACCCAACTGAAGAGCTA
TGGAACACAGTCCAGATTCACTCATCAGAGCAGCCAGAGATGTATCTTTT
CCAGCGCAGGCGAATCCAAGAATGAGAGGCCACTGGCCCGCACAACCGCG
ACCACTGAACTGGCGAGAGAATGGATTCTGGCAAGAGGAAAGAAATTCCT
ACATAGGCTGGAACCACGGGTGCCAGAGGTCGAGCTGAGTTCTCAACTGC
CAGGACCAGGCCTCCACAGCCTTAGCCACAGACAGACCGAGATGACAGAC
CAGGCAGCTTGCGGGGGGGGGGGGTAACCCTCCCCCTTCCTTCCCTATCT
TCTTCCTGGCGTGTAACCCTGAAAACGATCTCTCTCCGGTACCCTTCACG
CTTCCTTGTATAATGCCTGAATTCCCACCAAATATCCATAGTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_g24.b1 MSMg01no088_g24.b1 CHROMAT_FILE:
MSMg01no088_g24.b1 PHD_FILE: MSMg01no088_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:54 2005
         (239 letters)



>mm_chr11_84973209_84973848
          Length = 640

 Score =  420 bits (217), Expect = e-122
 Identities = 236/251 (94%), Gaps = 15/251 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagactaagcttataaacaaagtctggtttcctttggaaagtggccccaaaaaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 193 cacagactaagcttataaacaaagtctggtttcctttggaaagtgg---caaaaaaaaaa 249

                                                                       
Query: 61  aaaaaaa------------ctttccttgaatcaaatggctacagaaacacttgtccccaa 108
           |||||||            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aaaaaaaaaaaaaaaaaacctttccttgaatcaaatggctacagaaacacttgtccccaa 309

                                                                       
Query: 109 acacataactctgtcaagtccttgtgtgtgttcctttctttcttcctttagccttctcac 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 acacataactctgtcaagtccttgtgtgtgttcctttctttcttcctttagccttctcac 369

                                                                       
Query: 169 ttctcttccataacccatctttctgctataacccatgggagtaaatcctttacctagaga 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ttctcttccataacccatctttctgctataacccatgggagtaaatcctttacctagaga 429

                      
Query: 229 caaaattaaga 239
           |||||||||||
Sbjct: 430 caaaattaaga 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 640
Length adjustment: 9
Effective length of query: 230
Effective length of database: 631
Effective search space:   145130
Effective search space used:   145130
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)