Query= MSMg01no088_h22.b1 MSMg01no088_h22.b1 CHROMAT_FILE:
MSMg01no088_h22.b1 PHD_FILE: MSMg01no088_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:59 2005
(478 letters)
>mm_chr11_115440343_115441228
Length = 886
Score = 832 bits (430), Expect = 0.0
Identities = 466/482 (96%), Gaps = 8/482 (1%)
Strand = Plus / Minus
Query: 5 gaattcctttacagtaaccgatggcatgagactgtctcaccaaaccaacaatgtgttatc 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gaattcctttacagtaagcgatggcatgagactgtctcaccaaaccaacaatgtgttatc 627
Query: 65 actaaagcagggcacaactatcacaagatttttcacctttgctttagacttccagtctct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 actaaagcagggcacaactatcacaagatttttcacctttgctttagacttccagtctct 567
Query: 125 a-------gagaaaacaagtttctatccaacaatatatacaaagcagcagaccttcagtg 177
| |||||||||||| |||||||||||||| ||||||| ||||||||||||||||
Sbjct: 566 agaagagtgagaaaacaagtatctatccaacaataaatacaaaccagcagaccttcagtg 507
Query: 178 gtgcagctgctgcctacctgcctacacagtcagtagtaccaagctagccc-aaaacacaa 236
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 506 gtgcagctgctgcctacctgcctacacagtcagtagtaccaagctagcccaaaaacacaa 447
Query: 237 aacatgctggggagatggttggtgcataaggatgcttgccctacaagtatgagggacccc 296
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 446 aacatgctggggagatggttggtgcataaggatgcttgccctacaagcatgagggacccc 387
Query: 297 accaggaaataagccaaggggagctgtggatgcctcccacagggcactgaggaatggaca 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 accaggaaataagccaaggggagctgtggatgcctcccacagggcactgaggaatggaca 327
Query: 357 gaagtagatcctagagcttgctaaccaaccagagacagtaagctgctggctcagtaagtc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gaagtagatcctagagcttgctaaccaaccagagacagtaagctgctggctcagtaagtc 267
Query: 417 aatgtcatggcaacagagctgtggtctagagctgaggctctcacagtgtacactaaccac 476
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 266 aatgtcatggcaacagagctgtggcctagagctgaggctctcacagtgggcactaaccac 207
Query: 477 ca 478
||
Sbjct: 206 ca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 886
Length adjustment: 10
Effective length of query: 468
Effective length of database: 876
Effective search space: 409968
Effective search space used: 409968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no088_h22.g1 MSMg01no088_h22.g1 CHROMAT_FILE:
MSMg01no088_h22.g1 PHD_FILE: MSMg01no088_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:59 2005
(329 letters)
>mm_chr11_115323412_115324140
Length = 729
Score = 629 bits (325), Expect = 0.0
Identities = 328/329 (99%)
Strand = Plus / Plus
Query: 1 tgctgccctacctgtaccattggtcactgcctgccccacccctgccacctccagccaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctgccctacctgtaccattggtcactgcctgccccacccctgccacctccagccaggc 260
Query: 61 tgtccctggaaattggggtaaaggaaacgccaaggccactgtgaaagcttcttgtcacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtccctggaaattggggtaaaggaaacgccaaggccactgtgaaagcttcttgtcacct 320
Query: 121 cccagggggcggtgcccctccttgatacttagggctggagcataaggaagaagctgtttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccagggggcggtgcccctccttgatacttagggctggagcataaggaagaagctgtttc 380
Query: 181 agtcacccaggtggtgcggcaggtggtccagaggagggctggcagcctgccaaccacaag 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 agtcacccaggtggtgcggcaggtgggccagaggagggctggcagcctgccaaccacaag 440
Query: 241 gggcattctcttcccttccaggctgcggtcacaaaggaccagtaaggctgtggcaatacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggcattctcttcccttccaggctgcggtcacaaaggaccagtaaggctgtggcaatacc 500
Query: 301 agtaactgagaatggcccgggccctggaa 329
|||||||||||||||||||||||||||||
Sbjct: 501 agtaactgagaatggcccgggccctggaa 529
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space: 230400
Effective search space used: 230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
