BAC Information

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BAC

Clone NameMSMg01-088M11
Chromosome11 (Build37)
Map Location 118,433,157 - 118,433,340
singlet/doubletsinglet
Overlap geneD11Bwg0517e
Upstream geneTnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik
Downstream geneEnpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088M11.T7 (MSMg01no088_m11.b1)MSMg01-088M11.TJ (MSMg01no088_m11.g1)
ACCAG307445AG307446
length693805
length of high quality
(start - end)
186 (132 - 317)40 (135 - 174)
definitionCHROMAT_FILE: MSMg01no088_m11.b1 PHD_FILE: MSMg01no088_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:22 2005CHROMAT_FILE: MSMg01no088_m11.g1 PHD_FILE: MSMg01no088_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTAACTGGCTTGTTTTGGAAGTGACATGGATCTTGCAGCGCATA
TGACAGGTAGCATTTTCCCCGCCCTTGTCCCAAGAAATAAGTCAGACAAT
CACACTGTTCAAACTCTTTCTGGAGATTTCATTTAATTCTTTTTCACGTC
TCCCAGTGAGCCTGCACGTGGTGGGCTGGCTGGTGGAGGCGGAGGCTTCC
CTGGCCTGGTGTTCTTGGCTGTTGGGCTGCAGATTTGGCTTCCACACTAT
ACCATGAGCTCACTCTATTATAGATGATTTAGTCTCAATAGCTCCTTCCC
CAGACTGTGTCTGCCCCCCGCCCCTGCCTGGATCGCTGGGATGAGCCCTC
CTGGTTGCCCTCCCCCCTGCTGAACACGCAGTGCTGATTGAAATTCATTC
TGAGAGGACCGACCGTCGTATTACAGCACGTTAAAACACCCATCTGTGCA
ATCCTTATTTTGCACTGGTCAATCGTTTTGAAATAGTTATTCCCTCTCTA
TTTCCCCGCAATAATTTTCGTTTATAACCTCCCTATGGTCTCATATCACA
TTTATTGTTGTTCAAATTTCTTTGTCCTATAAGATGTCCTTCCGATGCTT
ACCATGTCTACTTTCCAATATTCAACCTATGCCAAATACAACT
TGGGTTGGTTTTGTTTTTTTTGGTTTTTTGTGGGGCCCTTCCTTTTNTTC
CATCTCTTTGCGCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCTCTAGCCAAGCA
AAGACGCTCTGGGCTCTATGTGATTGAGCTACATTGTCTTATCCAGAAGG
AAGTAGGCTGTGCTCACGGGTTCCAGCAAGACTGCTAGGCCGAGGTCTAG
GGAGCAGCTCAAAGGAGGGCCTGTAGTCCAGCCCAGAAGGATGGTCCTCA
GACAAGCCCCAGAGAGACAGGGGGAAGGAGTTCCCAAGGTAGGGCTCTGC
AGTACATGCAGGACAGTCTTGGGAGCTTGTTAGATCTAGCCAGTCAGGCC
CCACTGACACCGTGATATTTTTTTTCCCACCCCCCCCACCTTTGACCAGT
ATATAGATTTTGAGATGTTAACCTGGTGACCCCCCCTTGAAATAATGATA
TTCTCGTCGAGTGACTGCACTAAATAGGTGCCTTTGGGCCTTACTGGATT
GTGTATGACAAGTACCAGGTGGCTAGTTCGTCTCGACAGTCCTGAAACGT
ATGTCAACCCAGTGACTTGCCAAATTCACAATGCACGCCTCAAACGCCTC
AGCATTATATTCACGCCCTGGCTATGGTGCTAAATAAGCTAAACTAGAAG
TAGTGTAGTATACATTCCTTGCTTTTCTTATGAGGTCCTGTGCTGCACAA
GTAATTAATTGCATATTCATATAAGAAAACAAACACTAAAATCAAAGTAA
TTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_m11.b1 MSMg01no088_m11.b1 CHROMAT_FILE:
MSMg01no088_m11.b1 PHD_FILE: MSMg01no088_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:22 2005
         (186 letters)



>mm_chr11_118432957_118433542
          Length = 586

 Score =  317 bits (164), Expect = 2e-91
 Identities = 179/184 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaaataagtcagacaatcacactgttcaaactctttctggagatttcatttaattctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagaaataagtcagacaatcacactgttcaaactctttctggagatttcatttaattctt 325

                                                                       
Query: 61  tttcacgtctcccagtgagcctgcacgtggtgggctggctggtggaggcggaggcttccc 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttcacgtctcccagcgagcctgcacgtggtgggctggctggtggaggcggaggcttccc 265

                                                                       
Query: 121 tggcctggtgttcttggctgttgggctgcagatttggcttccacactataccatgagctc 180
           ||||||||||||| ||||||||||||||||||||||| |||||||||| ||| |||||||
Sbjct: 264 tggcctggtgttcgtggctgttgggctgcagatttgggttccacactagaccgtgagctc 205

               
Query: 181 actc 184
           ||||
Sbjct: 204 actc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)