Query= MSMg01no089_a19.b1 MSMg01no089_a19.b1 CHROMAT_FILE:
MSMg01no089_a19.b1 PHD_FILE: MSMg01no089_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:44 2005
(366 letters)
>mm_chr11_115372825_115373589
Length = 765
Score = 654 bits (338), Expect = 0.0
Identities = 356/362 (98%), Gaps = 1/362 (0%)
Strand = Plus / Minus
Query: 5 gaattccatgggcttcctaattccacttagcgatgaaagcctccctctctggggattgag 64
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 565 gaattccatgggctt-ttaattccacttagccatgaaagcctccctctctggggattgag 507
Query: 65 ggaggacaaagaggcacgttggggttgattctaatatttcaagtgttttcagtcatttaa 124
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggaggacaaagaggcacgttggagttgattctaatatttcaagtgttttcagtcatttaa 447
Query: 125 ggtaaaaattcaaaacagttctacccagtaagaaagaacctgtagagctggagatgtggt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggtaaaaattcaaaacagttctacccagtaagaaagaacctgtagagctggagatgtggt 387
Query: 185 ggtttgtccatagcctgggcaagacactgggttctgcccccagcagctccccacttccct 244
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 386 ggtttgtccgtagcctgggcaagacgctgggttctgcccccagcagctccccacttccct 327
Query: 245 tcccccctaaaaaatcaccccagaatttatctatacctttagtagtaatttaaacaactt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcccccctaaaaaatcaccccagaatttatctatacctttagtagtaatttaaacaactt 267
Query: 305 aattacctgggaacctggttggggggtgtgagcctgttataccggcactagggaggcagg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aattacctgggaacctggttggggggtgtgagcctgttataccggcactagggaggcagg 207
Query: 365 ag 366
||
Sbjct: 206 ag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 765
Length adjustment: 9
Effective length of query: 357
Effective length of database: 756
Effective search space: 269892
Effective search space used: 269892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no089_a19.g1 MSMg01no089_a19.g1 CHROMAT_FILE:
MSMg01no089_a19.g1 PHD_FILE: MSMg01no089_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:44 2005
(485 letters)
>mm_chr11_115270867_115271751
Length = 885
Score = 899 bits (465), Expect = 0.0
Identities = 480/485 (98%)
Strand = Plus / Plus
Query: 1 atgagagggcagcctgctcagtccatggagaacaggttccttttgctcgtgagaaaccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgagagggcagcctgctcagtccatggagaacaggttccttttgctcgtgagaaaccca 260
Query: 61 tccccctgctgttttcagagtccagtgaaactgtcagaaggagcctgggaaattagcata 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 261 cccccctgctgttttcagagtccagtgaaactgtcataaggagcctgggaaatttgcata 320
Query: 121 ctagaagtatttgcaaactagaatctttatactgaagaactccattagctttgcgggcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctagaagtatttgcaaactagaatctttatactgaagaactccattagctttgcgggcct 380
Query: 181 ttccatggccagttttgacataggctagaatagaatgtgcctgcttaggtggttggctat 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 ttccatggccagttttgacataggctagaatagaatgtgtctgcttaggtggttggctat 440
Query: 241 ccctgaggcctggactccggggcttctgagagtctcagaactgctgttcctccctccccg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctgaggcctggactccggggcttctgagagtctcagaactgctgttcctccctccccg 500
Query: 301 tccgcagtgaattccaaggctgaagtaaggtttcacttggccagtgcagactggattgag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccgcagtgaattccaaggctgaagtaaggtttcacttggccagtgcagactggattgag 560
Query: 361 gagcccgtgcgccagaagattgccctcacggtacctaccccctttctgtccccgtggatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagcccgtgcgccagaagattgccctcacggtacctaccccctttctgtccccgtggatc 620
Query: 421 cctgggttgggcagaggcttgtgggcctttcgggcattcctcattttcctccttggcagc 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 cctgggttgggcagaggcttgtgggcctttcgggcatttctcattttcctccttggcagc 680
Query: 481 ataaa 485
|||||
Sbjct: 681 ataaa 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
