BAC Information

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BAC

Clone NameMSMg01-089C15
Chromosome11 (Build37)
Map Location 116,276,597 - 116,276,939
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255
Downstream gene1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089C15.T7 (MSMg01no089_c15.b1)MSMg01-089C15.TJ (MSMg01no089_c15.g1)
ACCAG307733AG307734
length768771
length of high quality
(start - end)		---339 (129 - 467)
definitionCHROMAT_FILE: MSMg01no089_c15.b1 PHD_FILE: MSMg01no089_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:52 2005CHROMAT_FILE: MSMg01no089_c15.g1 PHD_FILE: MSMg01no089_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATTGAGCTGCCCTGATTACGTGAAAGTGACATGAACTGCAGAGC
TCAGGAGCTGTAGGGAGTGAGCCCTAGGTCACAGATGCTCCAAGGGCACT
GCCAGAGGCTGGCTTCGGTGGCTCATACCTCAAATTCCACCATGCTCAAG
ACCGATGCACCAGGAGTTATAAGAGGTAGAGGCCAGCCTAGGCTAGCAGT
GAGATCTTGCACTTGCACACACGCACACACGCACACGCAGAGAGAGAGAG
AGAGAGAGAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGATAGCTTCTCTCTATTCTACCGTTTTCGCCGCCAACCAAAACTTGTTA
ACATTGCTGGCTTTGAACCCCCCCCCCCCTTGCCCACTGCTCTATTCCCC
CCTCCGATCTATCCTTTATCCAATTTGTCCGCCTCGCCCCCCTGATAGTT
TCTCTATTCCTCTCACTTTTTTACTCTCCCCTGCTACCGATTTTGCGCCC
TGTCATATGTCCCCTACCTTACCCCCTTCCTCCTTCCCCCCTTTTTTTTC
CCCCCTTCCCTCCCTTTTTTTTTCCCCCCTTTTTTTTTCCCCCTTTTCCC
CCTTTTATTCCCCTTTTTTCCCCCTCCCCTTATCCCCCTGTATATTCGTC
CGCTTTCATCTTTTTTTGCCGCCCGTCTTTTCTCCTCTCACTTTTTTTTT
CCCCCCCCCCCCCTTTTT

GTGTTTTTGTTTGTGGGTTTTGTCCTTGTTTTTTCTCTNCCCCCCCCCCC
ATCNNTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACGTGAGCTGCTAGGCCCGCC
CCCCGAGCTGCAATCTACATAAAGTTGCTTTTTGCTTTCTAAATAAGCAA
GCAAGCAAACAAAACAAGCCTGGCACGGAGCCTCACTGCCGTGGCTGCTC
TATCTTATGTCTCTTTACTCTTCCAAGGCTGTGGGTATGATTTCCTCATG
GGAGGAGGCATTACCTTCTAGGATGGGAAGCGCTATGGAAGATAGGAATT
AATCTATATCAGGCTCCAAGCAGGCTGATGTCCTATGAGTGTCGCTACTT
TTTGTTTATTGGATTTATTTATTCATTTAAAGGCATGGTCTCACTATGCA
GCCCTGGTTAGCCTGGAACCCACCATGTAAACCAGGTGGGCCTTGAACTC
ACAGAGATCCACCTGCCTCTGCCTCCCAAGAGCTGAGATTAAAGGTATTC
ACTACCAATCCTGCCTGTACGTTGTTACCCTTGAATGTATGTCTGAGCAC
AATGTGCAGCGTCAGGTCCTCCAGAGTCCAATAAGGCTATGTACATTCCC
TGTATATCTTATCACTGTTTGCCTTCGAAAACCCTAATGTTCTTGTGTAC
ATTTACACTACATTTCTTTCTTCTAACCCGCCAACCCCTTTCTAATGAAT
GTTCCCTTCTGCTTACCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_c15.g1 MSMg01no089_c15.g1 CHROMAT_FILE:
MSMg01no089_c15.g1 PHD_FILE: MSMg01no089_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:52 2005
         (339 letters)



>mm_chr11_116276451_116277189
          Length = 739

 Score =  551 bits (285), Expect = e-161
 Identities = 325/343 (94%), Gaps = 8/343 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   tgagctgctaggcccgccccccgagctgcaatctacataaagttgctttttgctttctaa 64
           ||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 489 tgagctgctagcccctcccccccagctgcaatctacataaagttgctttttgctttctaa 430

                                                                       
Query: 65  ataagcaagcaagcaaacaaaacaagcctggcacggagcctcactgccgtggctgctcta 124
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 429 ataagcaagcaagcaaacaaaacaagcctggcccggagcctcactgccgtggctgctcta 370

                                                                       
Query: 125 tcttatgtctctttactcttccaaggctgtgggtatgatttcctcatgggaggaggcatt 184
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 369 tcttatgtctctttacttttccaaggctgtgggtatgatttcctcatgggaggaggcatc 310

                                                                       
Query: 185 accttctaggatgggaagcgctatggaagataggaattaatctatatcaggctccaagca 244
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 309 accttctaggatgggaagcgctatgggagataggaattaatctatatcaggctccaagca 250

                                                                       
Query: 245 ggctgatgtcctatgagtgtcgctactttttgtttattggatttatttattcattta--- 301
           |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||   
Sbjct: 249 ggctgaggtcctatgagtgtcgctactttttgtttattggatttatttatttatttattt 190

                                                      
Query: 302 -----aaggcatggtctcactatgcagccctggttagcctgga 339
                |||||||||||||||||||||||||||| |||||||||
Sbjct: 189 atttaaaggcatggtctcactatgcagccctggctagcctgga 147


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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