BAC Information

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BAC

Clone NameMSMg01-089L01
Chromosome11 (Build37)
Map Location 119,473,099 - 119,473,205
singlet/doubletsinglet
Overlap gene4932417H02Rik
Upstream geneD11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1
Downstream geneChmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089L01.T7 (MSMg01no089_l01.b1)MSMg01-089L01.TJ (MSMg01no089_l01.g1)
ACCAG308123AG308124
length799868
length of high quality
(start - end)
134 (127 - 260)153 (137 - 289)
definitionCHROMAT_FILE: MSMg01no089_l01.b1 PHD_FILE: MSMg01no089_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:35 2005CHROMAT_FILE: MSMg01no089_l01.g1 PHD_FILE: MSMg01no089_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCCCCTTCCNNNTCCAATTAXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTACAGGTGATGT
GTCTGATATGGAATCCTGTCTAATATGGAATGCCTGTAACACCATCACTG
ACATATGCACCAGTGTGTCACACGCACCAGTGTGTCAGAACCAGCTGCTC
TTCTAGCACAGGCTGTAAGGTGCAGAGGGCAGAGTACAGCTCAAGTCAAC
ACTCATCCCTTCTGAATGACTCAAGACAGCCAATAGTTCCTCCTGTACAC
TGCACACAAAGGTCACCTGTGCTCTTCTCACAGAACAAGATCCTCCTGCT
TGATTAAACTATGCCTTGTAACACACTCGCTCACGCATTTTTTTTCCCTC
CCCCCCCCCCCACACACATAGTTAATTCTACAGCTACTGATTCACCACCT
ATGAAAAAATGATATATGTCAGGGATGCGACTGCCCAAGCTCATATGTTT
CACAGGCACACCTCAGCTCTCTTTCTCACCTCAAAGTACCTCAAATGCTC
CTTGTACGAAAATGCCATAATGACACTTGGTTGTTATATCTCTTATATCT
ATGACTCCTGAAGTCTGTCTGGTCTATATATACTACTCCATAGACACCAA
CCCCACATCATCACCATCTTCGTCCTGTATCATCATTCTCCTTACTATAT
ATTTTTATTAGTCTCCTCTCCTACCTCTCTTAACCCATCTTCTTTTTCT
TTTTTTTTTTNNNTNTTTTTTTTTTTTTTTTTTTTCCCTTCCCCCTCTTC
CCTTTCTTTTCTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCTCAGGACCT
ACGGAGTAGGAGAGAACTGACTGGACAAGTTGTCCTGTCATGTGCTGTGG
CACATGAGTGCATTGCATGTGTAAAGTGGTTTGGAGGGGGGCGGGGGCAG
GAAGTGTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTTTCTTA
CATTTCCCTTTCTTCCCACCCCCCCCCCTTTTTCTTTTTTCTCTCTCCTT
TTTCCCTTTCCTTTTTTTTTCCTTTCCCTCCCCTCCTTTTTTTCTTTTCC
CTTCCTCTTCCCCCTTTCTCCTCTTCCCCCCCTTTTTCCCTCCATTCCAC
TCTCTTCCTCTCCCTCTTTCTCTACTTCCACACCCTCTTTCTTATAACCT
CCTTATCTTTTTCTCCACCCCATTCTTACACCTTTTTTATTTTTTTTTTA
ACCAATTATGTCTATCCATCAACCCCACACTTCTTTACTTCCCCTTTTCC
CTTCGATTCTTATCCTCCCCTCCTCCCTCCCTTCTTTTCCCCTTTTTATC
TTCCTCCCCCCTCTCTCTCTTTTCTCATCTCTTACAATCTCCCCCCCCCA
CCTTTCCCCACTCTCTCTTTTCCTTTTTCTACACCTTTTCATTACCCCTT
AATCCACCTCTCTTTATCCTCCAGCATCCCTTCACCTTTCCATTATCCTC
TCCCTTACCCCCATTTCCTATCTCTATACTCATCTCTCTCTACACTCCCT
CCATCATATCCCTACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_l01.b1 MSMg01no089_l01.b1 CHROMAT_FILE:
MSMg01no089_l01.b1 PHD_FILE: MSMg01no089_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:35 2005
         (134 letters)



>mm_chr11_119472895_119473428
          Length = 534

 Score =  207 bits (107), Expect = 2e-58
 Identities = 107/107 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtacaggtgatgtgtctgatatggaatcctgtctaatatggaatgcctgtaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gaattcagtacaggtgatgtgtctgatatggaatcctgtctaatatggaatgcctgtaac 252

                                                          
Query: 65  accatcactgacatatgcaccagtgtgtcacacgcaccagtgtgtca 111
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 accatcactgacatatgcaccagtgtgtcacacgcaccagtgtgtca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 534
Length adjustment: 8
Effective length of query: 126
Effective length of database: 526
Effective search space:    66276
Effective search space used:    66276
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)