BAC Information

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BAC

Clone NameMSMg01-091A03
Chromosome11 (Build37)
Map Location 110,028,962 - 110,029,426
singlet/doubletsinglet
Overlap geneAbca9
Upstream geneRgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6, Arsg, Wipi1, Prkar1a, BC029169, 1700012B07Rik, 1700023C21Rik, LOC100041492, Abca8b, Abca8a
Downstream geneAbca6, Abca5, Map2k6, LOC100041523, Kcnj16, Kcnj2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091A03.T7 (MSMg01no091_a03.b1)MSMg01-091A03.TJ (MSMg01no091_a03.g1)
ACCAG309077AG309078
length694691
length of high quality
(start - end)
481 (35 - 515)434 (74 - 507)
definitionCHROMAT_FILE: MSMg01no091_a03.b1 PHD_FILE: MSMg01no091_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:22 2005CHROMAT_FILE: MSMg01no091_a03.g1 PHD_FILE: MSMg01no091_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCAGAGGATCCGCGGAAT
TCTCTTCAGAAACCGGAGTAAAACAGAACCAACCGTCCAAGATAAGGAAA
ATCAAAACCAACATGTAGCAGTGACTCGAAAGAAGAAACGGGACTTCTCC
TCCGGGACAAAGATCTGTGGATGGACTTCTAGAAGATTCTTGCTTCGGCT
TCCTCAGAGTAAGTTAACCTCTAGACTGTGGTTGCTAGCACTTCAATGTG
AGAGACAAGCAGAGACAGAAAAAGTGCGGCAAACATTCCGGAGAAAGTCG
CCAAGTGTAGGAAGTTACTAGTAAGTTGTTTTGATTTTTCAAGTCTTTGA
GTATTTTATACTGGGTGGCTGAATAGTAGTTAGAAAACTAAGAACTTTCG
GTTTTACCCCATGGCTAAAGCATTTTGCAAAAACAGCAAATATCACAGAA
CAGGCAAGTGGGTAAGTGGAAAGAAATGTAGCTTGCTTGCCTCTCTCTTG
CTGTTTTCGAAGTTATTTGGATTGCTCTGTGTGTGTGTGTGTGTGTGTGT
GTGTGCTCAGTTTTACTGCCAGAGGAATGTCAACATCCGGATACCAAATT
TTATGATTTCTGGGTTGTTTTAACCAACTTTTGAAAGCATTTGAAAAAAA
ATTCAACTGAACCCTCTTTATCTAACTAACATATTAAACAGATC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGAAGTTAGACTCCAGAGAAACCAAA
TAACCCTATTTAAAAATGGTGTGCACCAGCTAAACAAAGAATTCTCAACT
GAGGAATATCGAATGGGCAAGAAGCACCTAAAGAAATGTTCAACATCCTT
AGTTATCAGGGAAATGCAAATCAAAACAACCCTGAGATTACACCTCACAC
CAGTCAGAATGGCTAAAATAAAAAACTCAGGTGATAGAAGATGCTGGCGA
GGATGTGGAGAAAGAGGAATACTCTTCCATGGCTGGTGGGATTGCAAGTT
GGTACAACCACTTTGAAAATCAGTTTGGTGGTTCTTCAGAAAACTGGACA
TAGTACTACCTGAGGACCCACCTATACCATTCCTGAGCATATATCCAGAA
GATGCTCCAACATGTAATAAGGACACATGCTTCACTATGTTCATAGCAGC
CTTATTTATAATAGCCAGGAGCTGACAAGAACCCAGGTGTCCTTCAACAG
AGGGATGAATGCAGAAAATGTGGTATATTTACACTATGGAGTACTACTCG
GCTACTTAAAACAATAATTCCTGAAAATCTTTAGCAAATGAATAGAACTT
AAAAAAATCATCCTGAGTGGAGTAACCCAATCCCAAAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_a03.b1 MSMg01no091_a03.b1 CHROMAT_FILE:
MSMg01no091_a03.b1 PHD_FILE: MSMg01no091_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:22 2005
         (481 letters)



>mm_chr11_110028750_110029626
          Length = 877

 Score =  818 bits (423), Expect = 0.0
 Identities = 456/469 (97%), Gaps = 4/469 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  gaattctcttcagaaaccggagtaaaacagaaccaaccgtccaagataaggaaaatcaaa 72
           |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 677 gaattctcttcagaaaccagagtaaaacagaaccaaccgtccacgataaggaaaatcaaa 618

                                                                       
Query: 73  accaacatgtagcagtgactcgaaagaagaaacgggacttctcctccgggacaaagatct 132
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 atcaacatgtagcagtgactcgaaagaagaaacgggacttctcctccgggacaaagatct 558

                                                                       
Query: 133 gtggatggacttctagaagattcttgcttcggcttcctcagagtaagttaacctctagac 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gtggatggacttctagaagattcttgcttcggcttcctcagagtaagttaacctctagac 498

                                                                       
Query: 193 tgtggttgctagcacttcaatgtgagagacaagcagagacagaaaaagtgcggcaaacat 252
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 497 tgtggttgctagcacttcaatgtgagagacaagcagagacagaaaaagtgtggcaaacat 438

                                                                       
Query: 253 tccggagaaagtcgccaagtgtaggaagttactagtaagttgttttgatttttcaagtct 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tccggagaaagtcgccaagtgtaggaagttactagtaagttgttttgatttttcaagtct 378

                                                                       
Query: 313 ttgagtattttatactgggtggctgaatagtagttagaaaactaagaactttcggtttta 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttgagtattttatactgggtggctgaatagtagttagaaaactaagaactttcggtttta 318

                                                                       
Query: 373 ccccatggctaaagcattttgcaaaaacagcaaatatcacagaacaggcaagtgggtaag 432
           |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| 
Sbjct: 317 ccccatggttaaagcattttgcataaacagcacatatcacagaacaggcaagtgggtaaa 258

                                                            
Query: 433 tggaaagaaatgtagcttgcttgcctctctcttgctgttttcgaagtta 481
           ||||||| ||||||||||||||||||||    |||||||||||||||||
Sbjct: 257 tggaaaggaatgtagcttgcttgcctct----tgctgttttcgaagtta 213


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 877
Length adjustment: 10
Effective length of query: 471
Effective length of database: 867
Effective search space:   408357
Effective search space used:   408357
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)