BAC Information

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BAC

Clone NameMSMg01-091L24
Chromosome11 (Build37)
Map Location 42,295,857 - 42,296,095
singlet/doubletsinglet
Overlap geneGabrb2
Upstream geneHspd1, LOC100039292, Gabrg2, Gabra1, Gabra6
Downstream geneAtp10b, EG544767, Pttg1, Slu7, LOC100039392, C1qtnf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091L24.T7 (MSMg01no091_l24.b1)MSMg01-091L24.TJ (MSMg01no091_l24.g1)
ACCAG309618AG309619
length837767
length of high quality
(start - end)
228 (181 - 408)239 (74 - 312)
definitionCHROMAT_FILE: MSMg01no091_l24.b1 PHD_FILE: MSMg01no091_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:22 2005CHROMAT_FILE: MSMg01no091_l24.g1 PHD_FILE: MSMg01no091_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTTCCTTAACTTTATTCCTTCCTTTTCATAAAAACTCTTTNCCNTCC
TCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGATCTTTCTTGACTTTTATCATGAATGGGTGTTGGATTTTGTCAA
ATGCTCTTTCTTCTTCTAACGATATGCCCATGTGGTTTTTTCTTTGAGTT
TGTTTATAAACTGGATTACATTTTTGGATTTCTGTATATTGAACCATCCC
TGCATCCCTGGGATGAAATCTACTTGGTCAGGATGGATGATTGTTTTGAT
GTGTTCTTGGATTTGGTTAGCGAGAACTTTATTGAGGATTTTTGCATCGA
TATTCATAAGGGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTCTTTT
TGTCATTTAGGTATCAGAGTAAATGTGGCTTCCTACAATGAGTTGGGAAG
AGTACCTTCTGCTTTTATTTTGTGGAATAGTTTGTGAAGAACTGGGATTA
GATCTTCTTTGAAGGTCTGATAGAAATCTGCACTAAATCCAAATGATCCT
GGGCTTTTTTTTTTTTCTTCGCTGGGATACTATTAATGATTGTTTTTATT
TCTTTATTCTATAGAACATCGTTTATATTATTTCACCTGAATTCCAATTA
ACTTTTGGATCTTGTTATTTGCCCAAAAAACTTGTTTCAATTTATTTATA
TTTCTTTTAGCTTCGGCTTATCACACCCCTTTTGGAAAAATCGCTCTAAC
GTCGTTTTTTTTATTTCTATCCAGGACTGGTTATTATTCCCTCCCCCCCC
TCTCTTCCTTATTTTTTCCCATAACCGCCAACCCTCT
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCCCATAAATACTTCTCAGGGGAAGTTGGCATTGCTATT
CTATGAATCTTTCCCTTTGTTTTGCTTTTAAACCACAGTCACTCATTTGG
GAAAAATCGCTAATGTATTTTCATTTTCCCATTTAATTTTTCTGTATCTG
GGGAGAAGCCAACAGGGAATGAGGGTGTTTAATTTGTGTCTAGTCTGCCC
TTTGAGCGTGCAAGAGCATCTGCTAGCTGTTCTAATGGGAAGACTTTAAA
ATATATTTTCATCACTGATACAAATGGTACTATCCTGATTTATCTACTGT
AGCAACATTTCGCAAGTTTTAAAAACTTGCTGCCACTACACTCTAACCTT
GAGTTTCCGTGAGTAACCCTGCTTATATAGTCCTCTAGATACTAGCTTTG
CCCTCAAAATTACATATTTTGTGAGATATTTCACTATTTCCCCTCAAGTC
TTCATGATTTCAAAAAAACAACCCAACGTCTTTTACTTACCACTTTGATA
ACACAACACGTAGGTCCTAATACCCTTCGCTTATTATCTTCCTCTACAGA
AAACGTCTCCCCCAACCGAGGCTTTCGACTGGTCAACCTGAATTTTCCGC
CTGTGAATCTTCTCTTAACCCAATACACACAATTTACCTTCATTGCCTGG
GTTAGAACTATCCTCGCCTCCTAATCTTGTTTACCAATCCCTTTTGTCAT
CACCGACTCCCGTCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_l24.g1 MSMg01no091_l24.g1 CHROMAT_FILE:
MSMg01no091_l24.g1 PHD_FILE: MSMg01no091_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:22 2005
         (239 letters)



>mm_chr11_42295657_42296295
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctcaggggaagttggcattgctattctatgaatctttccctttgttttgcttttaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttctcaggggaagttggcattgctattctatgaatctttccctttgttttgcttttaaac 380

                                                                       
Query: 61  cacagtcactcatttgggaaaaatcgctaatgtattttcattttcccatttaatttttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cacagtcactcatttgggaaaaatcgctaatgtattttcattttcccatttaatttttct 320

                                                                       
Query: 121 gtatctggggagaagccaacagggaatgagggtgtttaatttgtgtctagtctgcccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtatctggggagaagccaacagggaatgagggtgtttaatttgtgtctagtctgcccttt 260

                                                                      
Query: 181 gagcgtgcaagagcatctgctagctgttctaatgggaagactttaaaatatattttcat 239
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 259 gagcgtgcaagagcatctgctagctgttttaatgggaagactttaaaatatattttcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)