BAC Information

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BAC

Clone NameMSMg01-091N13
Chromosome11 (Build37)
Map Location 59,279,523 - 59,425,612
singlet/doubletdoublet
Overlap geneBC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221
Upstream geneOlfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4
Downstream geneOlfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091N13.T7 (MSMg01no091_n13.b1)MSMg01-091N13.TJ (MSMg01no091_n13.g1)
ACCAG309686AG309687
length713705
length of high quality
(start - end)
177 (67 - 243)224 (72 - 295)
definitionCHROMAT_FILE: MSMg01no091_n13.b1 PHD_FILE: MSMg01no091_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:29 2005CHROMAT_FILE: MSMg01no091_n13.g1 PHD_FILE: MSMg01no091_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,425,436 - 59,425,612)(59,279,523 - 59,279,746)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCTGTCACGAGGATGCTTAGGAATACCCAAGCCCTGTTTGCTGCA
AAGACCTCTCCTCAGAACGACCTGCATCTCTGAGAGATGCATGAAGAGAC
CGAGTCCAGGATTGAGATGTTGCAGCCAGATGAGGCCCTCAGATGAAAGG
GGAGTTAGGGCATTTTTCCCAAGAGAAGAAAAATGATTGCTAAAGGCTGA
TATCTTCCCGCACATGCTTCTCTGTGCTTGGCCTTTCTCTTACGAAAAGT
CGCAGCCACGTTCTTGGTTAATAGAAGCTGGCCGCTGTCCTCCCTCATAC
CCCGCATGCCTCAAGTCAACCGCCTGTTACTTGTCTCATGGCTACTCTTT
ACACCACGCTTCGCTCCTAGTTTAAAACAGGGAACCCAGCATTACACTGA
ACGACCTGCACACGAAGTCGATCATAATCTATCACATGCTCTACGACACT
ATCCCACAATGGTTCAGGGTGAGCTCCCTTGCCCCCTTTCTTTTCATTGA
CGGTTAGAGGCTATTCTCTTTGTCCAACGACCTACCTTGATTCCTGGCTA
TCCGTTTGACTCCCCCCCCCCAAATTCCTTTGATACAGATCTTCCCAACC
ATCTCCACGCTGACTGATACCCACCCTCACACTGTTCGACACCCCCTCAA
TCTTTGTTTTCCT
TCCGATGCAGTGTTAGCCTGGCGGCGCCTGTCGTAAAATTTAGGTGACCT
ATAGAATTCCCGCGGAATTCCAAATTCCAACTTTTACAGTGACTAAGAAC
AATTAGCATCCTGGATGACTGACTTATTGGAGCTCAAAACCAGTGCAAAG
TTTCACATGCAAGTATAAGACAGTCAGAAAACTACAAGATCCCAGAAAGA
TCTTCCTAATGCCAGCACCTGCCTCTTACTGCAACAGCGATGGAGGGCAC
ACAGTAAAGCGATGGCACAAACTGCATCAGTCCAGCAACATTCACAGAGT
CAGGGAAAATGAGGTCAGCAAAGTGGCTTTGGGCTGCTCCAAACACATGG
CCCTCCACAGAAACATGAGTAAAGTACAACTGTCAAAAAAACACTTTGCT
ATACATTTCCATATTCACAATTTTTATACCAGTCATGTGAGCGTAAGCGT
ATGGAAACCTGACAAGGCCTTGTGAGGCCTCCACTCATCCTCGATTTAAT
CTGTCTCTGACATGCTGCGATGATTTGCTTATGGCCGGACCACCGAGTGT
CACTGCCGTCATGTGCGCCCTTGTTGCCGTGCCCGAGGCCCTGTTGTAGC
ACCCGAGTTACTATGCAACTTTGGTTTTTCCTATTCCCGTTTCATTCCGT
CTGTTATTCTCTTATCTATCACCCGCCCTTCCATGAAAATCTCTACCCCC
CCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_n13.b1 MSMg01no091_n13.b1 CHROMAT_FILE:
MSMg01no091_n13.b1 PHD_FILE: MSMg01no091_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:29 2005
         (177 letters)



>mm_chr11_59425236_59425812
          Length = 577

 Score =  319 bits (165), Expect = 5e-92
 Identities = 174/177 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatgcttaggaatacccaagccctgtttgctgcaaagacctctcctcagaacgacctgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 377 gatgcttaggaatacccaagccctgtttgctgcaaagacctctcctcagaatgacctgca 318

                                                                       
Query: 61  tctctgagagatgcatgaagagaccgagtccaggattgagatgttgcagccagatgaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 317 tctctgagagatgcatgaagagaccgagtccaggattgagatgttgcagccaggtgaggc 258

                                                                    
Query: 121 cctcagatgaaaggggagttagggcatttttcccaagagaagaaaaatgattgctaa 177
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 257 cctcagatgaaaggggagtcagggcatttttcccaagagaagaaaaatgattgctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no091_n13.g1 MSMg01no091_n13.g1 CHROMAT_FILE:
MSMg01no091_n13.g1 PHD_FILE: MSMg01no091_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:29 2005
         (224 letters)



>mm_chr11_59279323_59279946
          Length = 624

 Score =  395 bits (204), Expect = e-114
 Identities = 219/224 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaattccaacttttacagtgactaagaacaattagcatcctggatgactgacttattgga 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaattccaacttttagagtgactaagaacaattagcatcctggatgactgacttattgga 260

                                                                       
Query: 61  gctcaaaaccagtgcaaagtttcacatgcaagtataagacagtcagaaaactacaagatc 120
           | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 gttcaaaaccagtgcaaagtttcacatggaagtataagacagtcagaaaactacaagatc 320

                                                                       
Query: 121 ccagaaagatcttcctaatgccagcacctgcctcttactgcaacagcgatggagggcaca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ccagaaagatcttcctaatgccagcacctgcctcttactgcaacagcgatggagggaaca 380

                                                       
Query: 181 cagtaaagcgatggcacaaactgcatcagtccagcaacattcac 224
           |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 cagtaaagcgatggcacaaactgcatcagtccaggaacattcac 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)