Query= MSMg01no093_b06.b1 MSMg01no093_b06.b1 CHROMAT_FILE:
MSMg01no093_b06.b1 PHD_FILE: MSMg01no093_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:13 2005
(418 letters)
>mm_chr11_65385768_65386585
Length = 818
Score = 567 bits (293), Expect = e-166
Identities = 327/345 (94%), Gaps = 14/345 (4%)
Strand = Plus / Minus
Query: 86 aaactgggaaagtatacaccctttccttagaaacac------acacacacacacatacac 139
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 818 aaactgggaaggtatacaccctttccttagaaacacacacatacacacacacacatacac 759
Query: 140 acacacacacacacacacacacacacacaca----ccagaaacatatacactttccctta 195
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 758 acacacacacacacacacacacacacacacacaccccagaaacatatacactttccctta 699
Query: 196 gaaacacacacactggaaaggtatacatttttccttagaaacacacacacacacaaatac 255
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 698 gaaacacacacactggaaaggtatacatttttccttagaa--acacacacacacaaatac 641
Query: 256 acaa--acacacacatacacaccatgcttatagcatgttttgtgaattgtatcatgcctc 313
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 640 acaaacacacacacatacacaccatgtttatagcatgttttgtgaattgtatcatgcctc 581
Query: 314 tttcatgtctttattttttaaaaccaggctttaaaaatttaggcttacgaacacttctca 373
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 580 tttcatgtctttattttttaaaaccaggctttaaaaatttaggcttacgaatacttcaca 521
Query: 374 tttactcaagtcatttgagatttgttggacatttggaatatttct 418
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tttactcaagtcatttgagatttgttggacatttggaatatttct 476
Score = 81.9 bits (42), Expect = 7e-20
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 118 acacacacacacacacatacacacacacacacacacacacacacac 163
||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 249 acacacacacacacacacacacacacacacacacacacacacacac 294
Score = 81.9 bits (42), Expect = 7e-20
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 120 acacacacacacacatacacacacacacacacacacacacacacac 165
||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 249 acacacacacacacacacacacacacacacacacacacacacacac 294
Score = 81.9 bits (42), Expect = 7e-20
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 122 acacacacacacatacacacacacacacacacacacacacacacac 167
||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 249 acacacacacacacacacacacacacacacacacacacacacacac 294
Score = 81.9 bits (42), Expect = 7e-20
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 124 acacacacacatacacacacacacacacacacacacacacacacac 169
||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 249 acacacacacacacacacacacacacacacacacacacacacacac 294
Score = 81.9 bits (42), Expect = 7e-20
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 126 acacacacatacacacacacacacacacacacacacacacacacac 171
||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 249 acacacacacacacacacacacacacacacacacacacacacacac 294
Score = 72.3 bits (37), Expect = 6e-17
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 135 tacacacacacacacacacacacacacacacacacac 171
|||||||||||||||||||||||||||||||||||||
Sbjct: 248 tacacacacacacacacacacacacacacacacacac 284
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 124
Number of extensions: 27
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 10
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space: 330881
Effective search space used: 330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no093_b06.g1 MSMg01no093_b06.g1 CHROMAT_FILE:
MSMg01no093_b06.g1 PHD_FILE: MSMg01no093_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:13 2005
(480 letters)
>mm_chr11_65315042_65315921
Length = 880
Score = 903 bits (467), Expect = 0.0
Identities = 476/479 (99%)
Strand = Plus / Plus
Query: 1 catttcagtttcaaataagaaccatcctctttctgaaatttccaagataattaaagaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttcagtttcaaataagaaccatcctctttctgaaatttccaagataattaaagaaat 260
Query: 61 atttgaaataggttttactcaattaaatccaagaaacatccacactaattcccaggtgtc 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 atttgaaataggttttactcaattaaatccaagaaacatccacactaactcccaggtgtc 320
Query: 121 aggcacgggtagatcatccttggccaaaataaatacacaaatcatgtccgtggtggcatc 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggcacgggtggatcatccttggccaaaataaatacacaaatcatgtccgtggtggcatc 380
Query: 181 cagcatcctcagagaaggcccataaaagtttacttcgtcgtctgtggtgatcaccttctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagcatcctcagagaaggcccataaaagtttacttcgtcgtctgtggtgatcaccttctc 440
Query: 241 ccaccagctcataaaaaacccatttaacacataatgtgttcttgctccccaagactgact 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 ccaccagctcataaaaaacccatttaacatataatgtgttcttgctccccaagactgact 500
Query: 301 tacaaataaatctttggcagaggtcagggtttgcctgtgctgagaacgggccaggccaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacaaataaatctttggcagaggtcagggtttgcctgtgctgagaacgggccaggccaaa 560
Query: 361 cgttttttcaagtgccttccccactcggtccagcttagcaagcctgcagacgcgcccaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgttttttcaagtgccttccccactcggtccagcttagcaagcctgcagacgcgcccaga 620
Query: 421 aatgcctgtccctttggaggctgacaacctggagcagtgtgttcccaaagcttggtaca 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgcctgtccctttggaggctgacaacctggagcagtgtgttcccaaagcttggtaca 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
