Query= MSMg01no094_b05.b1 MSMg01no094_b05.b1 CHROMAT_FILE:
MSMg01no094_b05.b1 PHD_FILE: MSMg01no094_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:34 2005
(232 letters)
>mm_chr11_83539696_83540324
Length = 629
Score = 379 bits (196), Expect = e-110
Identities = 222/232 (95%), Gaps = 3/232 (1%)
Strand = Plus / Plus
Query: 1 ttcaggggaaattattttctcatcataaatggaagcccctctaaccctgatcaaggtacg 60
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
Sbjct: 201 ttcaggggaaattattttctcatcataaatggaagctcctctaaccctggtcaaggtatg 260
Query: 61 tgcctccatttgttaagtcgcttatttttttttttgtaatatgtaattttcagcagataa 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tgcctccatttgttaagtcgcttatttttttt---gtaatatgtaattttcagcagataa 317
Query: 121 ttcgctagatttattagtgagtgtcttagtcagggtttctattcctgcacaaacatcatg 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 318 ttcgctagatttattagtgagtgtcttcgtcagggtttctattcctgcacaaacatcatg 377
Query: 181 accaagaagctagttggggaggaaagggtttattcggcttacacttccatgc 232
|||||||||| |||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 378 accaagaagcaagttggggaggaaagggtttattcagcttacaattccatgc 429
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 629
Length adjustment: 9
Effective length of query: 223
Effective length of database: 620
Effective search space: 138260
Effective search space used: 138260
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no094_b05.g1 MSMg01no094_b05.g1 CHROMAT_FILE:
MSMg01no094_b05.g1 PHD_FILE: MSMg01no094_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:34 2005
(436 letters)
>mm_chr11_83692027_83692862
Length = 836
Score = 812 bits (420), Expect = 0.0
Identities = 432/436 (99%)
Strand = Plus / Minus
Query: 1 aaaatttgcacaaagctgaataggaccacacagaatataatatacattcctgcgcatgca 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 607 aaaatttgcacaaagctgaataggaccacacagaatataatatacattcctgtgcatgca 548
Query: 61 cacatactccctgaatatcagccagccgcctcaatcactcaagagctatatgccacacct 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 547 cacatactccctgaatatcagctagccgcctcaatcactcaagagctatatgccacacct 488
Query: 121 gtgcccatcaggaatcataattccttctgactgcagacaatcctctgtcctccatgtcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gtgcccatcaggaatcataattccttctgactgcagacaatcctctgtcctccatgtcac 428
Query: 181 aataatgacccgtgacctcccgacacctacttccttaggcaaacttcaggaccctatcag 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aataatgacccgtgacctcccaacacctacttccttaggcaaacttcaggaccctatcag 368
Query: 241 gcccaactgccacatttactgttggatagcattcatgcttttagccaccgagcagctgca 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gcccaactgccacgtttactgttggatagcattcatgcttttagccaccgagcagctgca 308
Query: 301 gactctgctaaatgtttggatggaaagttttcttttttagttacatgtcaccgatggtgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gactctgctaaatgtttggatggaaagttttcttttttagttacatgtcaccgatggtgc 248
Query: 361 aattttctccaacagccctgtgactattcttatgcaacttaggtacctgtgtgtgtgtgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aattttctccaacagccctgtgactattcttatgcaacttaggtacctgtgtgtgtgtgt 188
Query: 421 gtgtgtgtgtgtgtgt 436
||||||||||||||||
Sbjct: 187 gtgtgtgtgtgtgtgt 172
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 6
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space: 353129
Effective search space used: 353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
