MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-094D19
Chromosome	11 (Build37)
Map Location	110,112,176 - 110,112,441
singlet/doublet	singlet
Overlap gene	Abca6
Upstream gene	Rgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6, Arsg, Wipi1, Prkar1a, BC029169, 1700012B07Rik, 1700023C21Rik, LOC100041492, Abca8b, Abca8a, Abca9
Downstream gene	Abca5, Map2k6, LOC100041523, Kcnj16, Kcnj2
Link	Open Mouse BAC browser

Click to get alignment info.

name	Rgs9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19739 MGI:1338824
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700096J18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67927 MGI:1915177
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs

name	Gna13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14674 MGI:95768
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9930022D16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320509 MGI:2444178
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	X83328 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13929 MGI:104837
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc16a6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104681 MGI:2144585
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Arsg (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74008 MGI:1921258
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wipi1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52639 MGI:1261864
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prkar1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19084 MGI:104878
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC029169 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:208659 MGI:2388266
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700012B07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69324 MGI:1916574
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 8 ESTs, 1 Protein

name	1700023C21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73257 MGI:1920507
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	LOC100041492 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041492
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Abca8b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27404 MGI:1351668
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Abca8a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217258 MGI:2386846
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Abca9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217262 MGI:2386796
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Abca6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76184 MGI:1923434
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Abca5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217265 MGI:2386607
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Map2k6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26399 MGI:1346870
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041523 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041523
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Kcnj16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16517 MGI:1314842
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kcnj2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16518 MGI:104744
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rgs9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755319 GeneID:19739 MGI:1338824
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : regulator of G-protein signaling 9 transcript_id : NM_011268.1

name	1700096J18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149262552 GeneID:67927 MGI:1915177
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs product : RIKEN cDNA 1700096J18 gene transcript_id : XM_001480042.1

name	Gna13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89001108 GeneID:14674 MGI:95768
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : guanine nucleotide binding protein, alpha 13 transcript_id : NM_010303.3

name	X83328 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115496472 GeneID:13929 MGI:104837
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : EST X83328 transcript_id : NM_025275.4

name	Slc16a6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71067106 GeneID:104681 MGI:2144585
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 16 (monocarboxylic acid transporters), member 6 transcript_id : NM_001029842.1

name	Slc16a6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71067108 GeneID:104681 MGI:2144585
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 16 (monocarboxylic acid transporters), member 6 transcript_id : NM_134038.2

name	Arsg (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:54607164 GeneID:74008 MGI:1921258
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : arylsulfatase G transcript_id : NM_028710.2

name	Wipi1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130229 GeneID:52639 MGI:1261864
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat domain, phosphoinositide interacting 1 transcript_id : NM_145940.2

name	Prkar1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142364451 GeneID:19084 MGI:104878
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase, cAMP dependent regulatory, type I, alpha transcript_id : NM_021880.2

name	BC029169 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:24418882 GeneID:208659 MGI:2388266
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC029169 transcript_id : NM_153782.1

name	1700012B07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94391041 GeneID:69324 MGI:1916574
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 8 ESTs, 1 Protein product : RIKEN cDNA 1700012B07 gene, transcript variant 2 transcript_id : XM_895288.2

name	1700023C21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94390908 GeneID:73257 MGI:1920507
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 1700023C21 gene transcript_id : XM_987400.1

name	Abca8b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23956075 GeneID:27404 MGI:1351668
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP-binding cassette, sub-family A (ABC1), member 8b transcript_id : NM_013851.1

name	Abca8a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:53749663 GeneID:217258 MGI:2386846
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP-binding cassette, sub-family A (ABC1), member 8a transcript_id : NM_153145.2

name	Abca9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22267465 GeneID:217262 MGI:2386796
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP-binding cassette transporter sub-family A member 9 transcript_id : NM_147220.1

name	Abca6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22267461 GeneID:76184 MGI:1923434
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP-binding cassette, sub-family A (ABC1), member 6 transcript_id : NM_147218.1

name	Abca5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22267467 GeneID:217265 MGI:2386607
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP-binding cassette, sub-family A (ABC1), member 5 transcript_id : NM_147219.1

name	Map2k6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802082 GeneID:26399 MGI:1346870
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitogen activated protein kinase kinase 6 transcript_id : NM_011943.2

name	Kcnj16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:130505928 GeneID:16517 MGI:1314842
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium inwardly-rectifying channel, subfamily J, member 16 transcript_id : NM_010604.3

name	Kcnj2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142354425 GeneID:16518 MGI:104744
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium inwardly-rectifying channel, subfamily J, member 2 transcript_id : NM_008425.3

name	Rgs9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755320 CCDS:CCDS25576.1 GeneID:19739 MGI:1338824
definition	GO_component : GO:0005834 - heterotrimeric G-protein complex [Evidence IEA] GO_function : GO:0005096 - GTPase activator activity [Evidence TAS]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence TAS]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0009968 - negative regulation of signal transduction [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007601 - visual perception [Evidence IEA] codon_start : 1 exception : mismatches in translation note : ROS GAP product : regulator of G-protein signaling 9 protein_id : NP_035398.1

name	1700096J18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149262553 GeneID:67927 MGI:1915177
definition	codon_start : 1 product : hypothetical protein LOC67927 protein_id : XP_001480092.1

name	Gna13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:89001109 CCDS:CCDS25577.1 GeneID:14674 MGI:95768
definition	GO_component : GO:0005834 - heterotrimeric G-protein complex [Evidence ISS] [Evidence TAS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence TAS] [Evidence ISS]; GO:0019001 - guanyl nucleotide binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0030154 - cell differentiation [Evidence IDA]; GO:0001701 - embryonic development (sensu Mammalia) [Evidence IGI]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS] [Evidence TAS]; GO:0001569 - patterning of blood vessels [Evidence IMP]; GO:0030168 - platelet activation [Evidence IMP]; GO:0007243 - protein kinase cascade [Evidence IDA]; GO:0030334 - regulation of cell migration [Evidence IMP]; GO:0008360 - regulation of cell shape [Evidence IDA]; GO:0007266 - Rho protein signal transduction [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : guanine nucleotide binding protein, alpha 13 protein_id : NP_034433.3

name	X83328 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75812978 CCDS:CCDS25579.1 GeneID:13929 MGI:104837
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 product : archaemetzincins-2 protein_id : NP_079551.3

name	Slc16a6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71067107 CCDS:CCDS25580.1 GeneID:104681 MGI:2144585
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; monocarboxylate transporter 6 product : solute carrier family 16, member 6 isoform a protein_id : NP_001025013.1

name	Slc16a6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527254 GeneID:104681 MGI:2144585
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2; monocarboxylate transporter 6 product : solute carrier family 16, member 6 isoform b protein_id : NP_598799.1

name	Arsg (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:54607165 CCDS:CCDS25581.1 GeneID:74008 MGI:1921258
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence ISS] [Evidence IEA] GO_function : GO:0004065 - arylsulfatase activity [Evidence ISS]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0004168 - dolichol kinase activity [Evidence ISS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : Arylsulfatase G protein_id : NP_082986.2

name	Wipi1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122367 CCDS:CCDS25582.1 GeneID:52639 MGI:1261864
definition	GO_process : GO:0006914 - autophagy [Evidence IEA] codon_start : 1 product : WD40 repeat protein Interacting with phosphoInositides of 49kDa protein_id : NP_666052.1

name	Prkar1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30794476 CCDS:CCDS25583.1 GeneID:19084 MGI:104878
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS]; GO:0031594 - neuromuscular junction [Evidence IDA] GO_function : GO:0030552 - cAMP binding [Evidence IEA]; GO:0008603 - cAMP-dependent protein kinase regulator activity [Evidence IGI] [Evidence IMP] [Evidence IDA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0008283 - cell proliferation [Evidence TAS]; GO:0001707 - mesoderm formation [Evidence IMP]; GO:0009887 - organ morphogenesis [Evidence TAS]; GO:0006468 - protein amino acid phosphorylation [Evidence TAS] codon_start : 1 note : protein kinase, cAMP dependent regulatory, type 1, alpha product : protein kinase, cAMP dependent regulatory, type I, alpha protein_id : NP_068680.1

name	BC029169 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:24418883 CCDS:CCDS25584.1 GeneID:208659 MGI:2388266
definition	codon_start : 1 note : ortholog of human family with sequence similarity 20, member A FAM20A product : hypothetical protein LOC208659 protein_id : NP_722477.1

name	1700012B07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82935340 GeneID:69324 MGI:1916574
definition	codon_start : 1 product : hypothetical protein LOC69324 isoform 2 protein_id : XP_900381.1

name	1700023C21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94390909 GeneID:73257 MGI:1920507
definition	codon_start : 1 product : hypothetical protein LOC73257 protein_id : XP_992494.1

name	Abca8b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956076 CCDS:CCDS25587.1 GeneID:27404 MGI:1351668
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA] GO_function : GO:0016887 - ATPase activity [Evidence IEA]; GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence ISS]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006810 - transport [Evidence ISS] codon_start : 1 exception : mismatches in translation product : ATP-binding cassette, sub-family A (ABC1), member 8b protein_id : NP_038879.1

name	Abca8a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23346593 GeneID:217258 MGI:2386846
definition	GO_function : GO:0016887 - ATPase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : ATP-binding cassette, sub-family A (ABC1), member 8a protein_id : NP_694785.1

name	Abca9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22267466 CCDS:CCDS25589.1 GeneID:217262 MGI:2386796
definition	GO_function : GO:0016887 - ATPase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : ATP-binding cassette transporter sub-family A member 9 protein_id : NP_671753.1

name	Abca6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22267462 CCDS:CCDS25590.1 GeneID:76184 MGI:1923434
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation note : ATP-binding cassette transporter sub-family A member 6 product : ATP-binding cassette, sub-family A (ABC1), member 6 protein_id : NP_671751.1

name	Abca5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22267468 CCDS:CCDS25591.1 GeneID:217265 MGI:2386607
definition	GO_function : GO:0016887 - ATPase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : ATP-binding cassette transporter sub-family A member 5 product : ATP-binding cassette, sub-family A (ABC1), member 5 protein_id : NP_671752.1

name	Map2k6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859654 CCDS:CCDS25592.1 GeneID:26399 MGI:1346870
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0000187 - activation of MAPK activity [Evidence IDA]; GO:0000165 - MAPKKK cascade [Evidence IPI]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA] codon_start : 1 note : protein kinase, mitogen activated, kinase 6; MAP kinase kinase 6 product : mitogen activated protein kinase kinase 6 protein_id : NP_036073.1

name	Kcnj16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:130505929 CCDS:CCDS25593.1 GeneID:16517 MGI:1314842
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005242 - inward rectifier potassium channel activity [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005267 - potassium channel activity [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : potassium inwardly-rectifying channel J16 protein_id : NP_034734.3

name	Kcnj2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680530 CCDS:CCDS25594.1 GeneID:16518 MGI:104744
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005242 - inward rectifier potassium channel activity [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005267 - potassium channel activity [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : potassium inwardly-rectifying channel J2 protein_id : NP_032451.1

name	LOC100041492 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041492
definition	number : 3 pseudo : _no_value

name	LOC100041492 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041492
definition	number : 2 pseudo : _no_value

name	LOC100041492 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041492
definition	number : 1 pseudo : _no_value

name	LOC100041523 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041523
definition	number : 3 pseudo : _no_value

name	LOC100041523 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041523
definition	number : 2 pseudo : _no_value

name	LOC100041523 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041523
definition	number : 1 pseudo : _no_value

name	9930022D16Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149262477 GeneID:320509 MGI:2444178
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 9930022D16 gene transcript_id : XR_035312.1

clone name	MSMg01-530G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-267F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-060F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341E24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-376F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-189I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-155K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-273K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-280O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-130A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-184B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-198O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-167N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-208N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394G07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-346I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-348N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485A08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-121G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-399E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-522O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171G22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291J01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-177I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-295C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275G06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-061C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314C03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138J01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-268J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-104O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129D15
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-094D19.T7 (MSMg01no094_d19.b1)	MSMg01-094D19.TJ (MSMg01no094_d19.g1)
ACC	AG311461	AG311462
length	1,324	684
length of high quality (start - end)	33 (29 - 61)	267 (106 - 372)
definition	CHROMAT_FILE: MSMg01no094_d19.b1 PHD_FILE: MSMg01no094_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:48 2005	CHROMAT_FILE: MSMg01no094_d19.g1 PHD_FILE: MSMg01no094_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:48 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	NTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTANAATTTATTTTT TTTAGGTATTTTTTGTAAAATTGTTCTATTTTATATAAATTATCGACACA CCANANAAGATGANANTAAAATTTAGAGGGGGAAACAGACGGCGTTGACG AGATGGCGATATAGCGCAGAAGGGTTTAGTTGTAGATCGTATCCCTCGTA GTTTACACGCGCTAGCGTTAACTTACGCAAGGCGCCCTATGCATGTTGGT ATAGCGTCGCTTCTGATTGTTTTGATGTTGTGATGACGCTAGGTGGGTGG ATAGGTATATGAGATGGTTGGGGGTGTTTCCGTGCGGCGCTTGTACGAGG TGTGCCTGCCGGCGGGGTGTTTGATTCTAACGGTAGAGTAAGACCTAATG ATGGTTGTTGAGGTTGGCTAGTGCCTGGGTAGAAGTGCAGGGAGTCGCGT TGAGAAAGCGGGTAGGGAACGCAAGAAGGGAGGAGGTGGAGGGGAGAGAA CAGAGGGATGGGCGCCGCCTGCTATGAGCACATAATTGAGGTATTTTGTC GCTTTATATCACCTTACACTTCAGAACTATTATCCATTTGTATTTACTCC ACCGTCTTCGGAGTATTTTCTGAAGTGAATATATCCGCGTGTGTGTTAAT GGAGACGCTCGTCTGTAAGATTCGCACCTGCGTGATGTACACAGCGTATA TCGCGGGTGAGTGAGTATATGGGAAGTGGCGTCTGATGTGGCGTATGCTA CGGTGTTACTACGCCGCTAGTCTTACAGAACATACGTCTGACTATGATCT GATTATCGCTGTTGTCGATCGTCAGTGTGTGCTTCAGAGTGTGTGTTAAT GCCGTTATGTGCTGCCGGTTCCGGCCGCGCCGCCCAAGGTGTCTGTATTG ATCTTTGTGTGTACGCGCACCGCTTGTGATCCGAGCGCATGTTGCCGAGC TAGTGTTATTATCCGCTGCGCAGTATATGACCTCACAGCTGTATTGATTC ATATGCGGCGGCGCACGCCAGTCATAAATAATCGACACACNTATATAATA TATTCCAGCCCGTCTTGTTATCGCGACGGTATATATAAATAGACGATATA AGTCGCGCACGCGACCCGATAATCTGACGAGAATGCACCGACAGTGACGT GATGATCGTTCTCACGCCGATTCCTGATTCGGCGCAGCGGTCCGCTGACN CGCGCGTGCGTAGCTGANCATGCGATGCTGAAGTCTGTAATGATTGCGCG CTTGAGTGTATGAGTGATAGTAAN	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXACTGATGTGACTAAAGTAATCTCTTGGTTTCACCCCATCAACACTCA TTTTTGTTCCTTGCATTTTAAGAAAAAAAAAAACTAAACAAATCAACAAC AAAATTTTGATTGCTTAAACTCGCCTGAATGATAAATTCATCGGATACAA TCCCAGTGAAATACGTTCATAATACTTATCTTCAGATTTAAATATAATAA AAATTTAACTGAATAACTCTTACTCAGAAGAACTGAGCTTTAAAAGAATA ATCAATACTCGAAATTACTTGATTCTGACTCACCAAAAGAATAACGTTTC TCTCAACTTTGTAAATAGAAACGACACTCAAAATGCATAAAGCAAAGTTC AAAATAAGTTAGGAACGAAGGAAGGAAGGAAAAAAGAATTATAGATTTAG AAGAGAGAGAACGTACTTTTACCCAGCAATTTTTCAAATAAACAAATTTT ATAAACCATTTTAGCTTTCATGATCTTTCAATTTAATCTTTCCTAAATTT ACATGACAAAATGCAATACAGTTCTTTCCTTGGTTACTATGGAAGCAAGC TAGAATCTACAGCTGTACTTCTCGAATAATTTCCGGTTGGTTCGGGGGAA ATAAAAATTATCTCTTAAACCACTTTAACATACT
quality values	Open. Hide. 0 3 7 7 9 9 9 9 9 21 24 9 9 9 9 24 24 25 24 24 21 17 17 21 21 21 17 24 24 24 21 21 39 23 23 23 29 37 23 23 29 16 16 3 0 0 3 17 11 32 39 39 39 39 39 37 37 24 9 9 9 9 24 24 12 12 12 9 24 24 24 24 9 9 9 9 24 29 24 24 12 12 24 21 19 9 11 3 0 3 6 6 8 8 6 6 12 19 25 17 17 16 19 9 9 15 13 18 19 12 11 11 8 8 8 8 8 8 8 10 8 8 8 9 6 6 6 6 6 9 12 10 10 8 8 8 8 10 9 10 9 10 12 8 6 6 8 8 8 8 8 6 3 0 3 0 3 9 9 22 19 12 3 0 3 0 3 12 11 19 27 21 13 10 8 8 6 6 8 8 8 8 10 8 6 6 6 6 6 6 9 8 8 8 8 8 8 8 8 8 8 10 14 13 13 10 9 9 10 8 8 10 10 9 10 9 6 6 6 6 8 8 12 11 9 9 11 10 10 10 10 9 9 9 9 8 8 8 8 8 8 9 9 12 8 8 8 6 6 6 6 6 6 8 10 11 11 9 8 8 8 8 8 8 11 11 10 10 8 10 7 6 8 8 8 8 8 8 8 10 10 8 8 8 8 8 8 9 10 8 6 6 8 8 8 8 8 8 11 9 10 10 10 8 8 6 6 6 8 8 10 8 8 8 8 8 8 8 8 8 10 10 8 8 8 8 8 8 8 8 10 10 10 10 12 10 10 9 8 8 6 6 10 10 8 8 8 8 10 9 10 10 10 10 12 12 12 12 12 10 12 8 8 8 8 8 11 10 11 12 11 11 8 8 8 8 8 8 6 6 8 8 6 6 8 6 10 10 10 8 8 8 8 8 6 6 6 6 8 10 6 7 8 8 8 8 8 8 8 10 10 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 8 6 6 10 6 6 6 6 8 8 8 6 6 7 7 11 10 6 6 8 8 10 8 8 8 8 8 8 7 6 8 8 6 6 6 7 10 11 10 9 9 11 10 8 8 8 8 6 6 7 7 6 6 8 8 7 7 6 8 8 6 8 8 8 8 8 10 10 9 9 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 8 8 8 10 9 9 8 7 6 6 8 6 7 11 12 14 11 12 10 9 10 10 8 8 7 7 7 8 9 6 6 7 6 7 6 8 10 8 8 8 8 8 8 8 8 8 8 8 8 10 10 8 8 8 8 8 8 9 10 10 9 8 8 8 6 8 6 6 8 6 11 10 9 8 10 10 8 8 11 8 8 8 9 6 6 6 6 8 8 8 8 8 8 9 8 8 8 8 8 8 8 6 6 6 6 8 6 6 8 6 8 8 9 11 13 8 8 8 8 8 8 9 18 18 9 9 9 6 8 6 6 6 8 8 6 6 8 8 8 8 10 6 6 7 7 8 8 12 8 8 6 6 8 8 7 7 6 7 6 8 8 8 8 8 8 8 6 6 6 8 8 10 8 6 6 6 8 8 8 8 8 8 8 8 8 8 8 8 10 9 9 9 10 11 11 11 10 8 8 8 8 8 8 8 6 6 8 8 10 10 10 8 8 6 6 8 8 8 11 6 6 6 6 8 10 6 6 8 8 8 11 9 9 8 8 8 8 10 8 8 6 6 8 6 6 6 8 8 6 8 8 8 8 6 6 6 6 8 10 9 11 8 8 8 8 8 8 8 8 10 8 8 8 8 10 8 9 8 8 8 8 8 8 8 8 8 8 10 8 6 6 10 10 8 8 8 8 8 8 8 8 10 12 8 8 8 6 6 8 6 6 8 8 8 8 8 10 8 8 8 8 8 8 8 8 10 10 8 8 8 10 10 11 10 9 8 8 8 8 8 8 9 13 10 10 8 8 8 6 6 6 6 6 6 6 8 8 8 10 10 10 8 8 8 8 8 8 11 11 10 10 10 15 11 13 8 8 8 8 8 6 6 7 7 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 11 13 10 9 9 9 10 8 11 11 11 13 14 7 10 9 9 10 10 10 13 11 8 8 8 8 8 8 10 10 13 10 10 8 8 8 8 6 6 8 8 8 8 8 8 8 8 8 10 13 10 8 8 9 6 8 8 8 8 10 13 10 10 10 8 8 6 6 7 7 8 6 6 8 8 7 7 6 6 6 6 8 8 15 13 11 11 10 8 8 8 8 8 8 10 8 8 8 8 10 10 11 10 10 10 10 10 6 6 6 6 6 6 6 6 6 8 9 9 9 9 9 9 6 10 7 6 8 8 9 9 9 8 6 6 6 8 8 10 9 8 10 8 8 8 8 8 12 11 10 8 8 9 8 8 8 7 6 6 8 8 8 8 8 8 11 9 9 3 0 3 10 10 10 10 10 11 13 8 8 8 8 8 8 8 8 8 8 8 8 9 9 6 6 6 6 6 13 10 8 8 8 6 6 6 6 6 6 8 10 11 11 9 8 8 8 12 10 10 8 6 6 6 6 6 6 10 16 11 10 8 8 10 6 6 6 8 8 9 9 9 10 9 9 9 13 16 18 10 9 8 8 8 8 8 8 6 6 8 10 10 8 8 8 8 8 6 8 6 6 6 6 8 8 6 6 6 6 7 7 8 8 8 8 8 8 8 8 8 8 8 8 8 8 12 6 6 6 6 8 8 13 7 8 6 6 8 8 7 6 8 7 7 6 6 8 8 8 6 6 6 8 10 10 10 6 6 3 0 3 13 12 10 10 10 10 8 8 8 8 8 8 10 11 11 3 0 3 11 11 8 8 8 10 10 10 15 11 10 8 8 8 8 8 8 10 8 8 8 10 8 7 6 6 6 6 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 10 10 12 8 6 6 6 6 6 8 3 0	Open. Hide. 23 28 29 29 28 23 23 32 30 22 15 11 10 10 10 10 16 16 10 10 10 21 21 29 29 22 17 19 8 9 10 24 21 37 33 33 22 19 11 14 19 23 42 42 32 42 42 42 42 42 36 21 21 9 9 9 21 17 29 28 34 34 48 37 37 36 30 26 26 19 15 22 36 38 48 42 32 29 15 15 24 32 44 48 48 48 41 41 41 42 42 30 23 13 11 11 13 16 24 24 12 15 12 10 15 21 24 24 32 43 38 30 16 16 16 36 32 32 28 12 12 12 28 38 59 43 41 41 43 43 33 32 27 27 24 27 18 22 22 36 36 32 32 24 15 15 15 21 21 28 28 28 43 43 52 57 57 57 68 57 57 43 39 39 43 43 43 43 29 42 42 35 35 35 35 39 34 24 16 16 18 18 35 43 47 45 43 43 33 22 19 34 11 11 14 24 24 24 24 20 35 35 43 43 43 39 39 43 42 39 39 39 39 39 57 47 47 43 42 42 43 41 41 26 27 27 43 43 57 57 43 36 27 34 34 34 44 43 43 33 43 33 38 38 35 32 32 35 35 43 43 32 32 35 43 43 33 33 33 43 44 57 57 50 43 42 33 33 43 43 41 30 30 18 14 10 10 16 17 17 17 32 36 32 43 27 27 27 32 32 42 32 27 32 17 17 17 17 27 27 39 42 39 24 24 17 27 27 32 32 28 23 28 28 42 32 37 43 47 46 48 48 46 46 43 39 39 46 46 48 43 43 28 28 23 18 18 18 14 14 26 23 21 12 11 11 12 15 28 30 48 48 43 43 41 41 41 43 30 28 14 12 13 18 18 28 34 34 23 19 8 8 8 15 13 28 21 28 18 14 14 15 24 32 29 28 23 17 18 14 14 14 24 24 23 24 20 28 28 34 21 24 17 22 21 21 14 14 21 26 16 19 15 20 11 11 11 18 18 28 31 28 31 30 30 32 28 22 21 15 13 12 12 12 12 10 10 10 8 8 8 10 10 17 11 12 11 11 11 23 21 24 24 20 21 20 24 18 20 15 18 11 11 11 12 12 13 28 27 39 42 39 37 37 28 19 28 13 13 17 30 30 30 28 23 18 11 11 12 16 15 13 12 15 15 30 30 39 25 24 11 11 11 24 24 33 33 33 33 33 29 19 12 10 12 11 19 23 39 39 37 37 47 41 41 39 34 34 30 25 25 30 32 32 32 32 32 37 37 37 35 32 30 33 37 25 21 18 14 14 14 21 24 28 30 30 20 12 9 11 11 14 19 23 20 20 20 23 19 16 10 10 10 10 12 17 16 14 18 18 23 10 12 13 18 15 9 9 9 15 10 14 13 21 21 30 19 15 10 9 10 10 15 18 14 19 12 15 12 12 11 15 21 19 22 11 12 8 8 8 8 8 8 10 10 13 8 8 7 7 7 8 10 10 10 15 15 15 12 12 12 12 12 11 11 13 9 8 8 8 8 8 10 15 11 10 10 8 15 8 9 12 15 15 15 13 8 8 8 8 8 10 9 10 10 10 12 8 8 8 8 8 10 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no094_d19.g1 MSMg01no094_d19.g1 CHROMAT_FILE:
MSMg01no094_d19.g1 PHD_FILE: MSMg01no094_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:48 2005
         (267 letters)



>mm_chr11_110111977_110112642
          Length = 666

 Score =  455 bits (235), Expect = e-132
 Identities = 259/267 (97%), Gaps = 2/267 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttccttgcattttaagaaaaaaaaaaa-ctaaacaaatcaacaacaaaattttgattgc 59
           ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 200 gttccttgcattttaggaaaaaaaaaaaactaaacaaatcaacaacaaaattttgattgc 259

                                                                       
Query: 60  ttaaactcgcctgaatgataaattcatcggatacaatcccagtgaaatacgttcataata 119
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 260 ttaaactcgcctgaatgataaattcatcggatacaatcccagtgaaatatgttcataata 319

                                                                       
Query: 120 cttatcttcagatttaaatataataaaaatttaactgaataactcttactcagaagaact 179
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 320 cttatcttcagatttaaatataataaaaatttaactgaataactcttac-cagaagaact 378

                                                                       
Query: 180 gagctttaaaagaataatcaatactcgaaattacttgattctgactcaccaaaagaataa 239
           ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 379 gagctttaaaataataatcaatactcgaaattacttgattctgactcaccagaagaataa 438

                                      
Query: 240 cgtttctctcaactttgtaaatagaaa 266
            | ||||||||||||||||||||||||
Sbjct: 439 ggcttctctcaactttgtaaatagaaa 465


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 666
Length adjustment: 9
Effective length of query: 258
Effective length of database: 657
Effective search space:   169506
Effective search space used:   169506
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information