BAC Information

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BAC

Clone NameMSMg01-094O06
Chromosome11 (Build37)
Map Location 115,371,821 - 115,372,422
singlet/doubletsinglet
Overlap geneHn1
Upstream geneRpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c
Downstream geneSumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094O06.T7 (MSMg01no094_o06.b1)MSMg01-094O06.TJ (MSMg01no094_o06.g1)
ACCAG311937AG311938
length1,380696
length of high quality
(start - end)		---602 (73 - 674)
definitionCHROMAT_FILE: MSMg01no094_o06.b1 PHD_FILE: MSMg01no094_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:43 2005CHROMAT_FILE: MSMg01no094_o06.g1 PHD_FILE: MSMg01no094_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGGGGGGGGGGGNGGGGGNNGNGNNNGGGCNNNNNGGNNNNGGCGGC
GNNGGGGGGGGGGGGNNNNNGGNNTNNCGGGTGGGGTCCGGTGATTCTGA
TGTGGCGGGGGTGCGGAGACTGGCCCGCTTAACTTCGAGATGCACACCGC
GTGTNAGGCTCTTCCGCCCCGTGATAGACGCTTATGCCGCAACGAGATCA
ACGGGAGAAAATAGCAAANGCGTGTGGATGCGACCGAANGGCGCCGTGGA
TGCGGCGTTCCCCGCCGCCCGCGTCCCCCGGCGTCGCCCGCCNGCTGCCC
TTCTCCNTCCTNTCGTTGTCGCTCTCGCGCTCCTTTGTGTGTGCCCCGCG
TGTCGGCTTCGGCGTGCGCCCGTAGCGCGTGCGGCTCGTTCCTCGCGTTA
ACGATTTCTGATCGCGCCACTTGCGCGTCCCCTCACACTCCCTGTCCGAG
CGCGCTTCGCATAATGCTTGTGGAGCGGGTACTGAAGTGTGCCGGTGGTA
CCGCTGCGTGTTGTGTGCGAGTGAATGATTGTGACGTGATGGAGCTAGCT
ATGCGCTAGTGAGCAATGCTTGCCTTGTGGCAGGCNCATGTATCTTACGT
AACAGATATACATGCCACACTTACGCCTAACTGAAGGTCTGATTAAGACG
GAGGTAAGAGCCGATCGATCGCAAGACGACCGCAGTAATAAANTGACTTA
GCAACCCACTAACCGATATTAGATGTGAAGTACGTCGCATCACTCGAAGA
TATGAGACCGCGCGATGCACATAGCGACATTGATGCGCCTGATATTTGCG
AGCATGATGAGCGATTATATAAAGAAAACTACATCAGTATGTAATGGTGC
TACAGATCAACATCTACTGCGTTAATTAATTTAGCGATGAGGTATAGAAA
CATCAAAAATATATACGATATGATACGAAACACACATAATGCTGAGATGA
GTTATATCAGATAGTAAACTCGTGAGCATGTNCGAGAGGATAGAATATAA
TCTGAACGATATTTCAGATATCGAAGAGACGATATGCGGTTGCCAGATAT
TGGACTAGACGAGACAGCACGCAATAACGAGCGATGGTGCGGATACGCAA
TGAGCTAGAACTACACATCTATTTAATCCACACAACTNCTCACTGCATCC
CTCGCTCCTGTACTCATATCACAAGCTAGTGCACTACTACGATCCGATAT
CATCATCCGTTGTATACAACATTAACGTATATATATGATGACGGAGATGA
AGAACTGACACNCATTACGATATTATATGCCCGCGATATACCCGACCATA
CGATAGAAGTGTCGCACATGACTAGAGTGACTTACGGCTGACAGTGTCAG
CACCGACGAGAGCTCACGCGAAGTATCATC

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTTAGGTTTTCTTGTTTTCTAGTCCT
GGTCTGCCCTCTCCCTGAACTGTGAAATTAGGGTCTCACTAAGATGCAAT
GTTCAGGCCTGGAGAGACCATGCTGCTCCTGTAGTTGGGCCTTGTTCAGT
TCCCTGCACCTGTGCCAGGCAGCTCACAGCCACCTGTAACTCTCTAGGGG
ATCAACACCTTCTGGACTCCGCTGCACCCCTCCAGCAAACAGATAACACA
ACGAACCACTCTTTTGCAGGAGGGAGAAGGGCAGAAGAGATGGCGTGGAG
GTTAAGAAAGCTGCCTGGCTGCTCTTGCAGGACTAAGATCCGAGTCCCAG
CACTGACATGTGGCTCACGAGCATCTACAACTTCAGGTCCAAAGTATTTG
ACACCCTTTTCTGGCCTGAGGACCAGGCAGGCATGTGGTTTCAGGCAAAA
CACTCATATACATAAAATAAAAATGAATTTAGAAAGATTTTTTTTTAAAG
AAATGGGGGCACACAATGACATCAACTAGAAAAACGGAGTTCTCAGCAGT
AAGAGGACCAGAGTTCTTGAAGGGACCAGAGTTTAGATCCTAGGACCCAC
ATCAAGTGGCTCCTAACTCCCTGTAACTCCAGAGGATTGGATGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_o06.g1 MSMg01no094_o06.g1 CHROMAT_FILE:
MSMg01no094_o06.g1 PHD_FILE: MSMg01no094_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:43 2005
         (602 letters)



>mm_chr11_115371620_115372622
          Length = 1003

 Score = 1141 bits (590), Expect = 0.0
 Identities = 599/602 (99%), Gaps = 1/602 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttttaggttttcttgttttctagtcctggtctgccctctccctgaactgtgaaattaggg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttttaggttttcttgttttctagtcctggtctgccctctccctgaactgtgaaattaggg 261

                                                                       
Query: 62  tctcactaagatgcaatgttcaggcctggagagaccatgctgctcctgtagttgggcctt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tctcactaagatgcaatgttcaggcctggagagaccatgctgctcctgtagttgggcctt 321

                                                                       
Query: 122 gttcagttccctgcacctgtgccaggcagctcacagccacctgtaactctctaggggatc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gttcagttccctgcacctgtgccaggcagctcacagccacctgtaactctctaggggatc 381

                                                                       
Query: 182 aacaccttctggactccgctgcacccctccagcaaacagataacacaacgaaccactctt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aacaccttctggactccgctgcacccctccagcaaacagataacacaacgaaccactctt 441

                                                                       
Query: 242 ttgcaggagggagaagggcagaagagatggcgtggaggttaagaaagctgcctggctgct 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttgcaggagggagaagggcagaagagatggcgtggaggttaagaaagctgcctggctgct 501

                                                                       
Query: 302 cttgcaggactaagatccgagtcccagcactgacatgtggctcacgagcatctacaactt 361
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cttgcaggactcagatccgagtcccagcactgacatgtggctcacgagcatctacaactt 561

                                                                       
Query: 362 caggtccaaagtatttgacacccttttctggcctgaggaccaggcaggcatgtggtttca 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 caggtccaaagtatttgacacccttttctggcctgaggaccaggcaggcatgtggtttca 621

                                                                       
Query: 422 ggcaaaacactcatatacataaaataaaaatgaatttagaaagattttttttt-aaagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 622 ggcaaaacactcatatacataaaataaaaatgaatttagaaagattttttttttaaagaa 681

                                                                       
Query: 481 atgggggcacacaatgacatcaactagaaaaacggagttctcagcagtaagaggaccaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 atgggggcacacaatgacatcaactagaaaaacggagttctcagcagtaagaggaccaga 741

                                                                       
Query: 541 gttcttgaagggaccagagtttagatcctaggacccacatcaagtggctcctaactccct 600
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gttcttgaagggaccagagttcagatcctaggacccacatcaagtggctcctaactccct 801

             
Query: 601 gt 602
           ||
Sbjct: 802 gt 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1003
Length adjustment: 10
Effective length of query: 592
Effective length of database: 993
Effective search space:   587856
Effective search space used:   587856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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