BAC Information

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BAC

Clone NameMSMg01-095L12
Chromosome11 (Build37)
Map Location 61,823,998 - 61,983,216
singlet/doubletdoublet
Overlap geneLOC100041558, Specc1
Upstream geneKcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325
Downstream geneAdora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095L12.T7 (MSMg01no095_l12.b1)MSMg01-095L12.TJ (MSMg01no095_l12.g1)
ACCAG312566AG312567
length678790
length of high quality
(start - end)
235 (89 - 323)286 (162 - 447)
definitionCHROMAT_FILE: MSMg01no095_l12.b1 PHD_FILE: MSMg01no095_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:50 2005CHROMAT_FILE: MSMg01no095_l12.g1 PHD_FILE: MSMg01no095_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,823,998 - 61,824,231)(61,982,931 - 61,983,216)
sequence
AAGATCCGCGGATTCATTTTAAATAGCCTAGATGTGTGATATCAAGTTGT
GTGTGCTGCTCCCTCCAAAGAGGGAAGTAGACCCGCCGCAAGTCAGCTTT
CTCTTTGGGGAGGATATACTTCAGTGTTGGAATTTCTTATGAGTCTGCGT
TTGTATATTTGTGTGACATAAATAGATAATCAGGAAACTTCTCAGACCCA
TGGGCGAGAAGATTCTTGGGACCAGGATCCCAGATGTAGAAGCCCAGCGT
TGGGAAAGCAGGTTTTTATATCAGGGAGCATTTGGAGGCGGGGGAGCCTG
AATCAGGTTATAGAAGAAGAAGTCCATAAGCCGCTGAGAAAGCAGAACGG
TAAGTACTGAGGACAAGTTGCTGGAGTGCTGCGTGCTGGCGGCTTCCCTG
CTCTGTCCCCATTCCCAGGCTTCATGTGGTGACTACCTACGGAGCTCAGC
GGCCCCCTAGCGTCCCTTGTATTTTATCTCTTCATTTAAAAGCTGCCACC
TGAGGTTCAAAATGAGCTTTTATCCAGTTTCTTAGTCCGTTTCTTGCTTC
TATTACCGAATACACCAAGTACTTTATTCATAAAATAGCAGTTCTCAGTT
CATAGTTTTGGATGTCGAAACACAATATGTGCAATCAGCCCACGCGTTCA
GCCTTGTGCTAGGGTGGTCCAAGCTAGA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCCCCGCCCCNNNNNAATTCTATGATXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGGGGATTGAGCTCCATAGAAGTTCATCACTGACCTGTG
TTCTAAACTACCAAATGGGCCTGCATGGGCTAAGGAATAGTTTCTCCCAA
TAAACAAACAACTGAGAAATATAGACAAGAAGAAGGGTAAGGAAGAGCAG
AAAAGAATTTAGTTATCATAGATCTATTATTTTCTTGTTTTTGTAATATT
GGGGATGCGATTCCAGCCTTGAACATGCTGCATAAATGTTTTACACCCCT
AGGCCCCACTTTTTTTTCCTCTTATGCCTTTAGCTTTTCCTGAAGCATAA
TGTTTTAAGGCCCCCATCACATTCTGTAACAGACAGATACCATAATATAT
TTAATCCTCCACTATAAGAAATTCTTATCATTTCCGATTTTTAAAATAAT
TATAAATAAAAGCATAATAAATCTGTAATTACATCTCTACAGGCATCTAT
GACTATTCTTTGGTATAATTATCTAGGAATGAAGAGCAATTCTGTGTTAG
GGGCACACTCATTTTTACAATACCTGTATACACTTCTTAACTTCTTCCCT
GAAGTTGGTACTCACCTGCTTTGTGTAGGATTCCCGTTCTGACATATTAT
TATCCCCACCACCACCTCCACCTACAACCATCTTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_l12.b1 MSMg01no095_l12.b1 CHROMAT_FILE:
MSMg01no095_l12.b1 PHD_FILE: MSMg01no095_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:50 2005
         (235 letters)



>mm_chr11_61823798_61824432
          Length = 635

 Score =  445 bits (230), Expect = e-129
 Identities = 233/234 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagtcagctttctctttggggaggatatacttcagtgttggaatttcttatgagtctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagtcagctttctctttggggaggatatacttcagtgttggaatttcttatgagtctgc 260

                                                                       
Query: 61  gtttgtatatttgtgtgacataaatagataatcaggaaacttctcagacccatgggcgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttgtatatttgtgtgacataaatagataatcaggaaacttctcagacccatgggcgag 320

                                                                       
Query: 121 aagattcttgggaccaggatcccagatgtagaagcccagcgttgggaaagcaggttttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagattcttgggaccaggatcccagatgtagaagcccagcgttgggaaagcaggttttta 380

                                                                 
Query: 181 tatcagggagcatttggaggcgggggagcctgaatcaggttatagaagaagaag 234
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatcaaggagcatttggaggcgggggagcctgaatcaggttatagaagaagaag 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no095_l12.g1 MSMg01no095_l12.g1 CHROMAT_FILE:
MSMg01no095_l12.g1 PHD_FILE: MSMg01no095_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:50 2005
         (286 letters)



>mm_chr11_61982731_61983416
          Length = 686

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggggattgagctccatagaagttcatcactgacctgtgttctaaactaccaaatgggcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 486 tggggattgagctccatagaagttcatcactgacctgtgttctaaactacgaaatgggcc 427

                                                                       
Query: 61  tgcatgggctaaggaatagtttctcccaataaacaaacaactgagaaatatagacaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tgcatgggctaaggaatagtttctcccaataaacaaacaactgagaaatatagacaagaa 367

                                                                       
Query: 121 gaagggtaaggaagagcagaaaagaatttagttatcatagatctattattttcttgtttt 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 366 gaagggtaaggaagagcagaaaagaatttagttatcctagatctattattttcttgtttt 307

                                                                       
Query: 181 tgtaatattggggatgcgattccagccttgaacatgctgcataaatgttttacaccccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 306 tgtaatattggggatgcgattccagccttgaacatgctgcataaatgttctacaccccta 247

                                                         
Query: 241 ggccccacttttttttcctcttatgcctttagcttttcctgaagca 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggccccacttttttttcctcttatgcctttagcttttcctgaagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)