BAC Information

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BAC

Clone NameMSMg01-095M22
Chromosome11 (Build37)
Map Location 88,798,728 - 88,799,006
singlet/doubletsinglet
Overlap geneScpep1
Upstream geneDynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2, LOC100038945, Akap1
Downstream geneOTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095M22.T7 (MSMg01no095_m22.b1)MSMg01-095M22.TJ (MSMg01no095_m22.g1)
ACCAG312634AG312635
length705704
length of high quality
(start - end)
366 (44 - 409)283 (58 - 340)
definitionCHROMAT_FILE: MSMg01no095_m22.b1 PHD_FILE: MSMg01no095_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:57 2005CHROMAT_FILE: MSMg01no095_m22.g1 PHD_FILE: MSMg01no095_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTTTGTACACCAGGTTGGCCTTGAAGTGCTGAGATTAAAGGCATTT
TGCACCACCACTGCCCGGCTACTTGTTGTTTCCTTTTTAGATTTACTTAT
TTTTATTTTATCCAAATGGGTATTTTGCCTGCTTGCTTCTGTCTGCACTA
TGTGTAGTTGGTGCCCTTGTAGGTTAGAAGACAGCATCCGATCCCCTGGA
ACTCGAAATCTGAGCTGCCATTGTAGGTTCTGAGACTTAGATCCTCTGTA
GGAACAACCAGTCCTCTCAACCACTTGAGCCGTCTCTCCAGCTCCCAGTA
TTTTCTTTAAAAAAATTTTTTTTTAATCTTATGTGTATGAATATCTTACT
TGCTTAGATATACGGGCACCAGGTAGATGCCAAACCTTCTTGAAGGCAGA
GATTTTGAATAGAAGCGTCTGGACCATAGGAGGCTATCACAGTGGCAAGG
AAAAAGTCAAAGGAGTGAAGTTTCAAAACACTGAGAAACCATGGAGGTGG
CCAGCTGTCGTGTGAGCCAGGGAACTCAACAATCTTAACTCTTATCCCAA
TCTACTGGTCCCTTTTCAAGTGACATGGACTGAAAAGAAAGAACTCAATG
CCAAGCCCAGGATGGCCAGAAAGGACCTGGATCCTGTCTCCTTTGTCTCT
TCCTC
CCTGTCGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXACTCTATAGACCAGGGTGGCCTCAGACTCAGACCCACCTTCCT
CTGCCTCCGAGGTACTGGGATTAAAGGCCTGCACTGCTACGCCTGGCTGT
CTTACAAATCCCTTGGAGCTGTTTGTTTCTCTTAGCACCTTTTGTAGTTT
TCCAGTGTATAGAGTTTGCAGAGTACAAATGAGCTGATTGGTGGGTAGCC
TCAGGCACAGGAGTTAGAGTCATGTTAGTTTTTCTACAGCATGTATGGTG
GAAGACGCAAATGCCTCCGCCCTGGAGGAGCAAATATATTTTTTTTTCCC
CCCCCCCCCCCAAATTTTTGATGCTGTCAGGAACCTACAAGGCTGCACAG
ACAAACAAAAAACACCGGAGGGGGGGGGGGCGTGTCAGGTGGATCTCTGC
CCAGAACACCCTGCTAGGCAAAATCAAATCAGGTCAACGTGTCTCTGCAC
TTTACACCTGCCATGAACAAAACCTCCCAACCCCTGAAATGTCCCCCATT
CCGCGCTGGCCTCTATTGTTTCTCTGGAGCAGTTCCCCTTTCAAGTCACT
GTGTTTCCTTGCCCCTGTCCCTTTTGGGGTAAAAAGGGAACCCATTGCGA
TATAATCCTTTTGAAAAAACCAAGCTCAATCGCCAACTTCTTGTTTTTCT
CCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_m22.g1 MSMg01no095_m22.g1 CHROMAT_FILE:
MSMg01no095_m22.g1 PHD_FILE: MSMg01no095_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:57 2005
         (283 letters)



>mm_chr11_88798437_88799119
          Length = 683

 Score =  524 bits (271), Expect = e-153
 Identities = 277/279 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctatagaccagggtggcctcagactcagacccaccttcctctgcctccgaggtactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 actctatagaccagggtggcctcagactcagacccaccttcctctgcctccgaggtactg 511

                                                                       
Query: 61  ggattaaaggcctgcactgctacgcctggctgtcttacaaatcccttggagctgtttgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ggattaaaggcctgcactgctacgcctggctgtcttacaaatcccttggagctgtttgtt 451

                                                                       
Query: 121 tctcttagcaccttttgtagttttccagtgtatagagtttgcagagtacaaatgagctga 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 450 tctcttagcaccttttgtagtttcccagtgtatagagtttgcagagtacaaatgagctga 391

                                                                       
Query: 181 ttggtgggtagcctcaggcacaggagttagagtcatgttagtttttctacagcatgtatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttggtgggtagcctcaggcacaggagttagagtcatgttagtttttctacagcatgtatg 331

                                                  
Query: 241 gtggaagacgcaaatgcctccgccctggaggagcaaata 279
           ||||||||||||| |||||||||||||||||||||||||
Sbjct: 330 gtggaagacgcaagtgcctccgccctggaggagcaaata 292


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)