BAC Information

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BAC

Clone NameMSMg01-095P18
Chromosome11 (Build37)
Map Location 85,395,472 - 85,395,787
singlet/doubletsinglet
Overlap geneBcas3
Upstream geneMrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d
Downstream geneTbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095P18.T7 (MSMg01no095_p18.b1)MSMg01-095P18.TJ (MSMg01no095_p18.g1)
ACCAG312769AG312770
length691712
length of high quality
(start - end)
320 (32 - 351)49 (58 - 106)
definitionCHROMAT_FILE: MSMg01no095_p18.b1 PHD_FILE: MSMg01no095_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:10 2005CHROMAT_FILE: MSMg01no095_p18.g1 PHD_FILE: MSMg01no095_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCGGCGCTATACGACTCCTATATGCAGAGATCCGCGGAATTCCAGATAA
CCTGGGCTACAGAATCAGTCTCTAAACAACAGGCACATAAAAATTTTAAA
ATTAAGAAGACACCCTGGATTCTGACTTCAGCAGCAGCTCTGAGTGGTTA
GTGAAGGCAAGACAGCCGGGGAATGAGAGAAAGAGCTAATGCTCAGACAT
TTAAGTGGCCAATGCTCTGGAGACCACCAGAAGGAAAGTCAGGAGGGCTT
TTATGTCTCCACCCCTCTAGACATGGATCCCATTTAAATTTTTGAGAGTC
TAATTTAATTTAGCCTGGCAACAATTTTGTTTGTTTTGTTTTGAGAAAGG
GTCTCTAGCACACCCCCCCGCTAGCATCAAACTCACAGAGATTCAGGTGA
CTCAGTTCCCCGTGTTTGAATTGAAGCTATGTGCCATCACAGCTAGCTTA
GCTTTATTATTTTTAAAAGCTGTGACTGCTGTTGACAAAGATAAAGCCAT
TTTGTCATGTGGCTGGAATATAATTTCCTATAATTTCATTGTAAAAGATA
CACAAGGAAGGTCAGAAGGCTATTTTAAAGCAAACTCTCGATGTGTAACA
GGTATTTTTAAATTGTGCACAGGATGTTCTTATGCCTTGTTCTCACAAAC
CTCCAGTCAGACTGCTGAGACTAAAGATGTGGGCAACTACC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAGTGCTAGGTTTTAAAGAGAAGGAGAGGATTGAAATGGGAGGG
TGGGAAGCCACAGGTATATACATTCAGGAATCATATATCATAATAGCTTC
AGGAAGTCTCTGAAACTAAGCAGATTCACTAAACTCCTCTGCTTCCCAAA
CTTACATAATTAGTAAGGACTTCTAGACAGACCTCTTTCTGATCATGCTA
GATGCCTGTAAGAGCCTTACACCAACTATTCTGCCTGGAAAAAAAAAACC
CGCTTCATCTTGTTTTTTTACCTTTGAGATATGCCATGATGGAATGTTGT
TTTTTTTTTTCCCCCCCCCCCCGTCATCTATGTTGGGTTTGCTCTTATTG
ATGCCCCCCCCCTTAGAAACATCAAAGTTCCCAGAGGGGTGCGCCGTTAA
CCCCCCTGGCCCACTAAACTATACTTTTGACGATATCTGGAGATCCAGTT
TGTATGTAGTTTCCCTTGTCTGCAGTCGTCTTATGGATCTGATCCTGTTT
CCCTCATGAGAACTGTGCATTACTTAAGCTCCCCCTATTATATTGACCCA
GCATAGCGTATACTTTCACCCTCATATGTCCCGTGCTAGCATTCGTTGAC
CTAAATCCCCACATATCTTCGGACACCATGCAGGTCTCTTTCCACATCCT
CTATTCTTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_p18.b1 MSMg01no095_p18.b1 CHROMAT_FILE:
MSMg01no095_p18.b1 PHD_FILE: MSMg01no095_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:10 2005
         (320 letters)



>mm_chr11_85395266_85395987
          Length = 722

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%), Gaps = 2/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcc-agataacctgggctacagaatcagtctctaaac-aacaggcacataaaaatt 64
           ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 522 gaattccaagataacctgggctacagaatcagtctctaaacaaacaggcacataaaaatt 463

                                                                       
Query: 65  ttaaaattaagaagacaccctggattctgacttcagcagcagctctgagtggttagtgaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ttaaaattaagaagacaccctggattctgacttcagcagcagctctgagtggttagtgaa 403

                                                                       
Query: 125 ggcaagacagccggggaatgagagaaagagctaatgctcagacatttaagtggccaatgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ggcaagacagccggggaatgagagaaagagctaatgctcagacatttaagtggccaatgc 343

                                                                       
Query: 185 tctggagaccaccagaaggaaagtcaggagggcttttatgtctccacccctctagacatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tctggagaccaccagaaggaaagtcaggagggcttttatgtctccacccctctagacatg 283

                                                                       
Query: 245 gatcccatttaaatttttgagagtctaatttaatttagcctggcaacaattttgtttgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gatcccatttaaatttttgagagtctaatttaatttagcctggcaacaattttgtttgtt 223

                           
Query: 305 ttgttttgagaaaggg 320
           ||||||||||||||||
Sbjct: 222 ttgttttgagaaaggg 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 722
Length adjustment: 9
Effective length of query: 311
Effective length of database: 713
Effective search space:   221743
Effective search space used:   221743
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)