BAC Information

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BAC

Clone NameMSMg01-096F04
Chromosome11 (Build37)
Map Location 53,549,373 - 53,549,622
singlet/doubletsinglet
Overlap genenone
Upstream geneFstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5
Downstream geneIrf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1, Rapgef6, Cdc42se2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096F04.T7 (MSMg01no096_f04.b1)MSMg01-096F04.TJ (MSMg01no096_f04.g1)
ACCAG313027AG313028
length794784
length of high quality
(start - end)
366 (141 - 506)250 (129 - 378)
definitionCHROMAT_FILE: MSMg01no096_f04.b1 PHD_FILE: MSMg01no096_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:38 2005CHROMAT_FILE: MSMg01no096_f04.g1 PHD_FILE: MSMg01no096_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTNNTNTNNTTNTNNTTTNTTNTTTTTTTTCCCCCCCNNCCC
CCCCTATACCNNACATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTT
CCGAGAGATCCGCGGAATTCACTGATCATCTCCCGAAAACCACACCAGAG
TCTATGTTCAGAGGACCCAGGCTCCAGCTGTGACTACCACATAAGGGTTT
TTATACAAGAAAAATAAATGAACTAAGACTGTTTTTAAAAAAGTTAGACT
GAGTTATATTGTGATATTATTGATATCTTAGGAATTAAAAAGGAAAACTT
CATAGCTTAATAGTGTTAACTGACAAGGTTTATTGTGCTGGTTGGTTTGT
GTGTTTCCAACACAACCCAGAGTTGTCTATGAAGAGGGACATTCAGTTGG
GGAACAGCCTCCAACAGACTGGCCTGTGGGCAAGTCAGCGAGGCATTTTC
TTGATTTATGATGGATGCTCAAGAATCCAGCTCACTGCGGGTGGTGCCAT
CCTTGGTAGAGGGGCCCGAGTTGTATAGGAAAGTAAACCGAGCATGCTAG
CCATGGGGAGAAAACCAGCTAAGTAGTGTTTATCTTCGCAGGTCTTCTGA
CTCATTTTCTGCGTTGAGCTTCTGTACTGGCTATGACTAGGAAGGGTAAC
TCAACCCTTTCTTCCCCAGTTTGGGTCCTGGCCAGTGTTTTATCACAGTC
TGAAAGGGAACCAGGACCGAGGGCGCCCGTCCAGCTCTAATCTGTACGCT
AAGGTATACTGCCTGAAGCGTCATCCTCACCTATGATCGACTAC
TTTTTTTTTTTTNTTTNTTTNTNTTTTTTTCCCTCCTCTCTTCCTCACCA
CANNCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGACCAAGAGACAGCTGGTGA
GTGTGGCTGTGCCAAGGGTCTGCGTTTTGTTAGGTTCCAGGACACGGCCA
AAGCTCCTGACCGGCTAAGAAGGTCCACAAAACAAAACACGCAGCAGCGT
CTAGAGAGACCTAGTGATCACCTCGACAGCACAGGCCCTGGGAAATTCTC
GCTTTTTTGGCAAAGGCTTTGGACTTGGACCTTAGCAAGAGAGAATGTGA
TTCTCTTTGTCCAGCTTCGGGAAACTGATCACATGCATAACACGTCGCTG
TTTCACATCCATCGCACGCTCCTCCGCCGCACTCACCCTACCATCCTGTA
TAACCGCTCCGTATGTGAGCTCACTGTCTCCCTCTACTGGAGACCATGAG
CTAAAGCAGGGCTGTGTCTGATCCTGGGGCACAGTTAAAGCTGAAGACAA
GCTCAGTCTGTATTGCCATAGATGCTCCTCATGCACTATTGATAGGTGCA
TGTGGAACATCATTGCCCAGAATTCCTATTATCCTGGGCAACTGGACTGG
TTCTAACTGTGCCCACTCTTGCATGTAGATTCCCTTTACTTCCTACCCCC
CACACTTGGTCATCATTCCTTCATTTATAATCATATAACTTGTTCTTCAT
TCCCTACCATTGCTTATATTTTCCTCTTGGCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_f04.g1 MSMg01no096_f04.g1 CHROMAT_FILE:
MSMg01no096_f04.g1 PHD_FILE: MSMg01no096_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:38 2005
         (250 letters)



>mm_chr11_53549173_53549822
          Length = 650

 Score =  476 bits (246), Expect = e-139
 Identities = 249/250 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaccaagagacagctggtgagtgtggctgtgccaagggtctgcgttttgttaggttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aagaccaagagacagctggtgagtgtggctgtgccaagggtctgcgttttgttaggttcc 391

                                                                       
Query: 61  aggacacggccaaagctcctgaccggctaagaaggtccacaaaacaaaacacgcagcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aggacacggccaaagctcctgaccggctaagaaggtccacaaaacaaaacacgcagcagc 331

                                                                       
Query: 121 gtctagagagacctagtgatcacctcgacagcacaggccctgggaaattctcgctttttt 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gtcaagagagacctagtgatcacctcgacagcacaggccctgggaaattctcgctttttt 271

                                                                       
Query: 181 ggcaaaggctttggacttggaccttagcaagagagaatgtgattctctttgtccagcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ggcaaaggctttggacttggaccttagcaagagagaatgtgattctctttgtccagcttc 211

                     
Query: 241 gggaaactga 250
           ||||||||||
Sbjct: 210 gggaaactga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)