BAC Information

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BAC

Clone NameMSMg01-097L21
Chromosome11 (Build37)
Map Location 71,073,882 - 71,074,164
singlet/doubletsinglet
Overlap geneNlrp1c
Upstream geneAlox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b
Downstream geneLOC100043249, 9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097L21.T7 (MSMg01no097_l21.b1)MSMg01-097L21.TJ (MSMg01no097_l21.g1)
ACCAG314097AG314098
length845769
length of high quality
(start - end)
173 (126 - 298)283 (125 - 407)
definitionCHROMAT_FILE: MSMg01no097_l21.b1 PHD_FILE: MSMg01no097_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:35 2005CHROMAT_FILE: MSMg01no097_l21.g1 PHD_FILE: MSMg01no097_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:35 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCCCCTTCCTTTTTCCCCCTTTCTACCCTTAATCACTTCACCCCCATTAT
TTTTTACTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAACC
GCGGAATTCCAGCATTTTGCTGAAAGAAGCAGAAGGATCAAAAATTCAAG
ACCATCCTAAGCTACATTCCAAGTTTGACGCCATCTTCAGCTACATGAGA
CCCTGGCACAAATGAAAGAGTTTGAGGCCAACCTATAGGCGACACAACAA
GAAATTGTCTTCAGAGGTTGGTATATGGGGGGTGGGATAGGGTGATTTCT
GACCCCCTTTCCGCCACCCCCCTTTTTATCTCTACCCCCACTTACCCGCG
TCCTCCAACCAACGCATTTCCCCATCTCTTTTTTTATCCTTGGATACTTT
GGCGACGACCCACAATTTTTTTTTTCCTCCCCCCCCCCCCTCCTGCATAG
CCGGTGTTTTTTGTTTGTTCGTCCCTGGCCCTTTATTCCTAAATATAATC
ATTCTTCGTTTCCCCGCCCCTCCACGTCCGTTCTTTTTTTATATCGCAAC
CTATTGTTGCATTCTCGCCCTTCGTTCGGTACTGAGCTCCCCTTATACCT
CGCTTTGTACGCCCCGCCCTTCCTTTTCTCCCCCCTTATTTTGAATGTGT
CATTCTAGAACGTCTCCCTTTTTTGTGACACAAAATCACATCAGTTTCAC
GCCTCCTTTTCTCCAAATTTTTTTGTGTGCTCACCCCATAACATTACCCT
GTGCGACCCTTATTCTCGCGTCTGTTTATTCCTTACCCCCTAATATTATT
TTTCCCACCGCTTTTATCTTTCACCCCATCACCTTTTTCTCCCCG
CTTACCCCNNNNNNNNNNACCTTTNCTTCNCCCCCCTCTCTTTTTCCCNN
CCCGATGCAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTACCTAGACCAGAATAGGCACAAC
AGAGACCTAACCACTGGCATATCAACATGCCACAAATCACAGAGACCTGA
GATAAGTTTTTAAAGGCAATGAGACCTAGAGAAGCTGACAGTGAGCATCT
CCCATGCAGGCTTGTTGAATGCGGCCTCACATCCACATACTGCTCACTCC
TGGCCTCAGTGCTCAGTGCCTGCTCCAGCCTGAGAGAGATAGACCTGCAG
CTAAATGACCTGTGTGACAATGTTGTAAGGATGCTGCGTGAGGGGCTCAG
GAATCGTGCCTGCAACCTCAGAACCCTGCGGTAAGCAAGCTATGCATTCC
CTTTCTGACATAAGGACAGGAAGGGACATAGGTGAGCTCCCAGATGACAA
AACATAGAAAAGGGATAGATATATCATAGTTAACCTGGCTCCTGGCCAGC
TGTGCCACTAACACCCTGTGATTGGACAAGTCTATATCTTCCGGAAAACT
CAGTGTCCTCCCGGATCAAACGGAACGTGATACCCCACCCATATACATGG
CACGTCCATTTCCTAAGTACCATCCCCACCACCCCCCGCTCCATACCCAT
ATCTTACATCCTATATATATATTCCCTTTCCTATATACTTTCCCAACAAA
TACCGGACCACCAAGTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_l21.g1 MSMg01no097_l21.g1 CHROMAT_FILE:
MSMg01no097_l21.g1 PHD_FILE: MSMg01no097_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:35 2005
         (283 letters)



>mm_chr11_71073615_71074297
          Length = 683

 Score =  275 bits (142), Expect = 3e-78
 Identities = 248/288 (86%), Gaps = 14/288 (4%)
 Strand = Plus / Minus

                                                                       
Query: 3   tacctagaccagaataggcacaacagagacctaaccactggcatatcaacatgccacaaa 62
           |||||||||||||| |||||||||| |||||||||||||||||  ||| ||||   | ||
Sbjct: 550 tacctagaccagaaaaggcacaacaaagacctaaccactggcagctcagcatg---ctaa 494

                                                                       
Query: 63  ---tcaca----gagacctgagataagtttttaaaggcaatgagacctagagaagctgac 115
              |||||    ||||||||||||||||||| ||| |||||||| ||| |||||||||||
Sbjct: 493 ggctcacaaagggagacctgagataagttttcaaaagcaatgagccctggagaagctgac 434

                                                                       
Query: 116 agtgagcatctcccatgcaggcttgttgaatgcggcctcacatccacatactgctcactc 175
           ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agtgaccatttcccatgcaggcttgttgaatgcggcctcacatccacatactgctcactc 374

                                                                       
Query: 176 ctggcctcagtgctcagtgcctgctccagcctgagagagatagacctgcagctaaa-tga 234
           ||||||||||| ||||||||||||||||||||||  ||| || |||||| ||| || | |
Sbjct: 373 ctggcctcagtactcagtgcctgctccagcctgactgagctaaacctgcggctgaact-a 315

                                                           
Query: 235 cctgtgtgacaatgttgt-aaggatgctgcgtgaggggctcaggaatc 281
           |||| || ||  || ||| |||  ||||| ||||||||||||||||||
Sbjct: 314 cctgggtaaccgtggtgtgaagc-tgctgtgtgaggggctcaggaatc 268


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)