BAC Information

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BAC

Clone NameMSMg01-098D12
Chromosome11 (Build37)
Map Location 113,748,037 - 113,877,831
singlet/doubletdoublet
Overlap geneSdk2
Upstream gene2610035D17Rik, Slc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4
Downstream geneLOC100041739, LOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098D12.T7 (MSMg01no098_d12.b1)MSMg01-098D12.TJ (MSMg01no098_d12.g1)
ACCAG314456AG314457
length697703
length of high quality
(start - end)
290 (51 - 340)282 (59 - 340)
definitionCHROMAT_FILE: MSMg01no098_d12.b1 PHD_FILE: MSMg01no098_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:15 2005CHROMAT_FILE: MSMg01no098_d12.g1 PHD_FILE: MSMg01no098_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,748,037 - 113,748,313)(113,877,551 - 113,877,831)
sequence
CTACCAGTTCCAAGAGGATCCGCGGAATTCTCTTCTATCTTCCCATTAGG
TGAATGTTACAGAGTTTTAAACAGGCTCTCAGATAAACATCCTCACTAAT
GTCTCTCTGGCCCAGCTCTCTCCTCGGCTGGCTGTGCTGGCCCCACCCCT
TTGCTCTTGAATTTGGGGCTTTTCAGGCCGAGGGTCCTCACACCATCAGG
GAGAGTTCTGGGCAGTTGGGTGGCAAGCTCTCTGGCCCCCAATGCGTAGG
GACCCTAGTGATGTCCTATTTTCTCGTGGAGAGTTCTTTTTATCTTTAGC
TAATGAGAAGATGGGAATAAGATCATAAAGATCATAGCCCAGCTAGTATA
GTGTGTGTGCACGCACAAGAATATGCATGTATGTTTACACGGATCTGTGT
ACATGTGTTGCGTGTGCAGTCTTTTTTTTTTCCTTTTTTGATCTTTCGAG
ACCGGGTTTCTCTGTATAGTACTGGCTGCCCCGGACATCACTTTGTAGAT
CAGGCTGGCCTCGAATTCAAAAACCCTCTTGCCTCTGTCTCCCAAGTGCT
GGTATTAAAGGAGTGTACCTCCATCTCCTGTTGTGTGTGCCCTTGCCTTT
ATTTACCCCACACCTCCTTTTCGCCACTTTTCGATGACCCCCTTCGATGA
TTCCCCCCCTACTGTCCGGCATTAATAAACCCCTATATGCCTTTCCA
GGCGGCCGCCTGTTCGACAAATTGAGGTGACCTATAGAATTATCAGCGGA
ATTCCATCCAGACCCACCTCTGAAGACCGTGTTAAATGTGGCTTTTCTGC
CTCTTAACACGGCGTTTATGTTCCCTCCACATCCCCTCATAGAGATGTCA
TGAGAATCAGACAGGACAGATCTGAGCATTACAACTCTGAGATTGTAATC
ACAGTCACAGAAGTCCCGAGCCTTCTGCTCTCAAGAGCCAGATGTGCTTG
CCTCCAGACATCAGGAGAGACGTTTCAGCCAGCCTGGGCAGGGGCTGATG
TTGTTGCTGGGTCTGAGAATCAAATTGGGGTGTCCCCCATTAACAGGTCC
TCACCCACCCCCACACAGTGTGTTGAAGCATCCAAAATTAAATTTCATGC
CTGGCTGCACAGAGATACCAACTCAGCCCCGTGTGTTTACGGCTCGAGGA
GGAGATAAGATTTGATTAAGAAGGCCGCTATTAATTTATGGAGCACGCCG
GCGCGTAGGGAGAGGCTGCTTTTAATTATATAGCCAGAAGGAGTTTACGC
TTTTGGTCTCAGCAAGGCGGAGAGGGCTGTGAGGCTCGACCGATGTCGAA
TTGATTCAGACATATTCTCACCTTCTCTCTGAATAGGATACTTATTAATA
TAGGCCTTGCCTGGTAATGATTTAAGCAGGCCGTTCTGGCTCCACAGTAT
GTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_d12.b1 MSMg01no098_d12.b1 CHROMAT_FILE:
MSMg01no098_d12.b1 PHD_FILE: MSMg01no098_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:15 2005
         (290 letters)



>mm_chr11_113747837_113748526
          Length = 690

 Score =  536 bits (277), Expect = e-157
 Identities = 277/277 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaatgttacagagttttaaacaggctctcagataaacatcctcactaatgtctctctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaatgttacagagttttaaacaggctctcagataaacatcctcactaatgtctctctgg 260

                                                                       
Query: 61  cccagctctctcctcggctggctgtgctggccccacccctttgctcttgaatttggggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccagctctctcctcggctggctgtgctggccccacccctttgctcttgaatttggggct 320

                                                                       
Query: 121 tttcaggccgagggtcctcacaccatcagggagagttctgggcagttgggtggcaagctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcaggccgagggtcctcacaccatcagggagagttctgggcagttgggtggcaagctc 380

                                                                       
Query: 181 tctggcccccaatgcgtagggaccctagtgatgtcctattttctcgtggagagttctttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctggcccccaatgcgtagggaccctagtgatgtcctattttctcgtggagagttctttt 440

                                                
Query: 241 tatctttagctaatgagaagatgggaataagatcata 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatctttagctaatgagaagatgggaataagatcata 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no098_d12.g1 MSMg01no098_d12.g1 CHROMAT_FILE:
MSMg01no098_d12.g1 PHD_FILE: MSMg01no098_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:15 2005
         (282 letters)



>mm_chr11_113877351_113878032
          Length = 682

 Score =  505 bits (261), Expect = e-147
 Identities = 276/281 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagacccacctctgaagaccgtgttaaatgtggcttttctgcctcttaacacggcgttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cagacccacctctgaagaccgtgttaaatgtggcttttctgcctcttaacacggcgttta 422

                                                                       
Query: 61  tgttccctccacatcccctcatagagatgtcatgagaatcagacaggacagatctgagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgttccctccacatcccctcatagagatgtcatgagaatcagacaggacagatctgagca 362

                                                                       
Query: 121 ttacaactctgagattgtaatcacagtcacagaagtcccgagccttctgctctcaagagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttacaactctgagattgtaatcacagtcacagaagtcccgagccttctgctctcaagagc 302

                                                                       
Query: 181 cagatgtgcttgcctccagacatcaggagagacgtttcagccagcctgggcaggggctga 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cagacgtgcttgcctccagacatcaggagagacgtttcagccagcctgggcaggggctga 242

                                                    
Query: 241 tgttgttgctgggtctgagaatcaaattggggtgtccccca 281
            | ||  ||||||||||||||||||||||||||||||||||
Sbjct: 241 ggctggggctgggtctgagaatcaaattggggtgtccccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)