BAC Information

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BAC

Clone NameMSMg01-098D14
Chromosome11 (Build37)
Map Location 33,225,169 - 33,225,662
singlet/doubletsinglet
Overlap geneRanbp17
Upstream geneSh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3, LOC666258
Downstream geneAnp32c, LOC669306, LOC666269, Gabrp, D130052B06Rik, Kcnip1, Kcnmb1, Lcp2, Foxi1, Dock2, EG574403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098D14.T7 (MSMg01no098_d14.b1)MSMg01-098D14.TJ (MSMg01no098_d14.g1)
ACCAG314460AG314461
length684696
length of high quality
(start - end)
496 (36 - 531)54 (76 - 129)
definitionCHROMAT_FILE: MSMg01no098_d14.b1 PHD_FILE: MSMg01no098_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:15 2005CHROMAT_FILE: MSMg01no098_d14.g1 PHD_FILE: MSMg01no098_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCAT
TCCCAGTATCTTGAGCTAACGTGCAGAGCTAATCTGCTCCATCTGGGTCC
AACCCTCTTCAGTCAGGGTCAGTACCCGAGATCTCTCCTCCCTGAAATGT
TTACACATCTGGAATTCTAGTTTCTATCTGAACAAGCTATGATGAGACTG
TTCAAGTGTCTGGAGTAGGGAAGCAGGAAAAGAGGCGTGAAGGTCAACAA
AGCACTCTAATGTACCTTACCGTGACTGCCGTAAAGGAGTCTCCTGAGTC
CTGGGACCTACTCCTTATCACTTGAGCTTTCCTTCTTTTGGAGAGTAGCT
GGTCAGGCTTTCTGCTGCAGTTCATCGTCCAGATGATAGCAGTAACACCG
CTCACTGTGGCCTCACATTGATGGTAATGAGTACTTAATGCACTTAAGAG
TCTTGATGAGGACCAGAGTTGGACCCCCACACCCATGGCAGGTGGTTATG
GTACCAGTAACTCCAGCACCAAGGAATCCAGCATCCGCTTTTGGCCTCCC
AATGCACACATACATGCCAAATGTGCAGACACACACACTCATACCCACAA
ATCATAGTAAGTATTTTAAAACAATAATAAACCCCGCCAGGCAGTGGTGG
TATATGTCTTTAATCCCAGCACTTGGTAGGCATA
ACATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTGCTGTATGACT
TTCCTACACCGGCTTTCTCAGTGTAGACCAGGCTCGCCTGGAACTCACTT
TGCAGACCAGGCTGACCTTGAATTCAGAAAGCCACCTGACTCTGCATCTT
ATGTGTAGGGATTAAAGAAGTGTGTCACCCCCGCCAGGCTGAGATCTGAC
TTCTCACTGTTATGGTATTGTATAAAATCACAGCTCCCAACTGCGGCCTG
AACTATTTAATGCCCCCTACACATCCCCTCACGGCGACTAGACTCCACGT
AGATAAGTCATGACTGCGCCTGTTTATAGATTAATGCGTGAGACAGGTTC
GCAAGCCTCACCTGTACAAGGTCCACTACGTGGTGTAAGCAGGCTTCTGT
AATGAAGGATAGAAAGCCCTGGAACACTGGGAACTTCCACGTTGGCTTGT
ATTTGTCCCTAATGTCAGCGCTCAGGCTCTAGCTCCTGATCTGCATCAGG
AATGACCCATTCTTTGCCAATCAGAAGACTTCCACCCCTCTCGATCCCTC
CAAAGAGTTGTAAACTCCAGAATTTAAGTATACGCCTCCTGCCGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_d14.b1 MSMg01no098_d14.b1 CHROMAT_FILE:
MSMg01no098_d14.b1 PHD_FILE: MSMg01no098_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:15 2005
         (496 letters)



>mm_chr11_33225075_33225972
          Length = 898

 Score =  897 bits (464), Expect = 0.0
 Identities = 486/494 (98%), Gaps = 2/494 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcattcccagtatcttgagctaacgtg--cagagctaatctgctccatctggg 62
           |||||||||||||| |||||||||| ||||||||  ||||||||| ||||||||||||||
Sbjct: 588 gaattcttcattccaagtatcttgaactaacgtgcacagagctaacctgctccatctggg 529

                                                                       
Query: 63  tccaaccctcttcagtcagggtcagtacccgagatctctcctccctgaaatgtttacaca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tccaaccctcttcagtcagggtcagtacccgagatctctcctccctgaaatgtttacaca 469

                                                                       
Query: 123 tctggaattctagtttctatctgaacaagctatgatgagactgttcaagtgtctggagta 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tctggaattctagtttctatctgaacaagctatgatgagactgttcaagtgtctggagta 409

                                                                       
Query: 183 gggaagcaggaaaagaggcgtgaaggtcaacaaagcactctaatgtaccttaccgtgact 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gggaagcaggaaaagaggcgtgaaggtcaacaaagcactctaatgtaccttaccgtgact 349

                                                                       
Query: 243 gccgtaaaggagtctcctgagtcctgggacctactccttatcacttgagctttccttctt 302
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 348 gccgtaaaggagtctcctgagtcctgggacccactccttatcacttgagctttccttctt 289

                                                                       
Query: 303 ttggagagtagctggtcaggctttctgctgcagttcatcgtccagatgatagcagtaaca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ttggagagtagctggtcaggctttctgctgcagttcatcgtccagatgatagcagtaaca 229

                                                                       
Query: 363 ccgctcactgtggcctcacattgatggtaatgagtacttaatgcacttaagagtcttgat 422
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 228 ccgctcactgtggcctcacattgatggtaatgagtagttaatgcacttaagagtcttgat 169

                                                                       
Query: 423 gaggaccagagttggacccccacacccatggcaggtggttatggtaccagtaactccagc 482
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 168 gaggaccagagttggacccccacacccatggcaggtggttatggtacgagtaactccagc 109

                         
Query: 483 accaaggaatccag 496
           ||||||||||||||
Sbjct: 108 accaaggaatccag 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 898
Length adjustment: 10
Effective length of query: 486
Effective length of database: 888
Effective search space:   431568
Effective search space used:   431568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)