BAC Information

Click to search

BAC

Clone NameMSMg01-098F20
Chromosome11 (Build37)
Map Location 69,922,361 - 69,922,600
singlet/doubletsinglet
Overlap genenone
Upstream genePer1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2
Downstream geneMgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098F20.T7 (MSMg01no098_f20.b1)MSMg01-098F20.TJ (MSMg01no098_f20.g1)
ACCAG314565AG314566
length799780
length of high quality
(start - end)
352 (117 - 468)240 (135 - 374)
definitionCHROMAT_FILE: MSMg01no098_f20.b1 PHD_FILE: MSMg01no098_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:27 2005CHROMAT_FILE: MSMg01no098_f20.g1 PHD_FILE: MSMg01no098_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCNCCCCCCCCCCCT
CCCCCCCCCATTGTCCCCCCTTATCTATXXXXXXXXXXXXXXXXXXXXXX
XXXXTTCAAAAGAGGATCCGCGGAATTCAAGGTTCCCCTGGTCTGTATTA
ACAGCTCTAGGTTAGTCAGGGTTAACTCTATAGTAAAACTCAGGCAAAAA
AGAATTACTAAAAGAGCTGGTCAGTGGTGGCACATGCCTTTAATCCCAGC
ACTCCGGAGACAGAGGCAGGCGGATTTCTGCGTTTGAGACCAGCCTGGTC
TACAAGGTGAGTCCCAGGACAGCCAGGGCTACGCAGAGAAACCCTGTCTT
GAAAACAAACAAACAAACAAACAAACAAAAAGAAAGAAAAAGATATCCCA
GAAGAAACTGAAGAAACAAAAACTCATGACAGGAATAAATTCCGCAGAAA
ATAAATGCAGATAAAGTAAGAAAGGAAGGAAGGAAGAACACAATGAAAGG
AAGGAAGGAAGGATAGAGAGAGAAAGAGAAAGAGAAAGAAAGAAAGAAAG
AATGAAAGATAGAACGAAAGAAAGAAAGAAATATAGAACGAATGAACGAA
AGAAAGAACGAATGACCGATAGACATGATAGAAAGACCGATCGAAAGTAC
CTGCCTTAGTATCCATGTTCCATGAACGTTAGTCTGCTACTGAGCTCTCA
TGACGTTTCCTCCCCACACTTTTTGGTCTGGAATTCTTAGCAATGCTTCC
TTCTAGGAAAAAACCTATCTTTACGAACGCTCAGCTCTGCCAAAAAGGT
NNNNNNNNNNNNNNNNNNNNNTTTTNNNNNNNTTCCCCCTTNNTTTCNAT
TTCTTTCCCTCTCTATGATATGTGTXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGTTGCCACGGCTG
TGTTGTGCTTAGAAGATGTCCCTTTACAGCCTTTCGCCATGTCTGTGACT
CTTTGAACATTTTTTTTCCTATCCTCTCCTCAGCAGTGTTCCCTAAGCCT
TAAGGGTTCATGTAAATGACTTGTTTATTCTAAATTTATTCACAGCATCT
TGTGTGGTTTCTCTGTCTAAAGTGGAGAGTCGTCTTTGTTTGTAAGCACT
AATGTGGATATTCCATGGGTGGCTTTGTTATTCGTCAATTCAGCTGAACA
ACACTCTTGGATTCCCCACTGGGGTCTAACCAACACCTTTATACTCCCAG
GTTTTAGATTGGGTTTATAATACTAAGTATGGGTTATCACATGGCTGTGA
ACTCTCTCCTACTATATTTTTATTTTAAAATTGATTTTTCACTGGACAGT
GGTAGCATACGTCTTTAATCCCAGAAATTGGCAGGCACAGTCCCGTTGAT
CTCTCTATTTTGAGGCTCGCTTGCCCCACCCAACCGATTTCTTGTGAACG
TCAAGGTAACTCATATAACATTTCCGTCCCTGAAAAGATTACCCTCCTTT
TTTTACTTTCCCCCCTGACTTTCTTCACACTTTATTTTACATTTTTTGCT
CACCATTACCCGCCTGACCCCCATTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_f20.g1 MSMg01no098_f20.g1 CHROMAT_FILE:
MSMg01no098_f20.g1 PHD_FILE: MSMg01no098_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:27 2005
         (240 letters)



>mm_chr11_69922161_69922800
          Length = 640

 Score =  464 bits (240), Expect = e-135
 Identities = 240/240 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggttgccacggctgtgttgtgcttagaagatgtccctttacagcctttcgccatgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atggttgccacggctgtgttgtgcttagaagatgtccctttacagcctttcgccatgtct 381

                                                                       
Query: 61  gtgactctttgaacattttttttcctatcctctcctcagcagtgttccctaagccttaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtgactctttgaacattttttttcctatcctctcctcagcagtgttccctaagccttaag 321

                                                                       
Query: 121 ggttcatgtaaatgacttgtttattctaaatttattcacagcatcttgtgtggtttctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggttcatgtaaatgacttgtttattctaaatttattcacagcatcttgtgtggtttctct 261

                                                                       
Query: 181 gtctaaagtggagagtcgtctttgtttgtaagcactaatgtggatattccatgggtggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtctaaagtggagagtcgtctttgtttgtaagcactaatgtggatattccatgggtggct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)