Query= MSMg01no098_h10.b1 MSMg01no098_h10.b1 CHROMAT_FILE:
MSMg01no098_h10.b1 PHD_FILE: MSMg01no098_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:35 2005
(564 letters)
>mm_chr11_21617080_21618046
Length = 967
Score = 1035 bits (535), Expect = 0.0
Identities = 555/565 (98%), Gaps = 7/565 (1%)
Strand = Plus / Minus
Query: 5 gaattcactctatcgctgcatttctatggaattctataaaaagcaaatcttaatctgtaa 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 gaattcactctatagctgcatttctatggaattctataaaaagcaaatcttaatctgtaa 906
Query: 65 caagagaaatcaaagcagtgattatcagttgtaaggaaggtggggccaagtacaaaggac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 caagagaaatcaaagcagtgattatcagttgtaaggaaggtggggccaagtacaaaggac 846
Query: 125 tttaggagaatgctttagtgagatgaaaatgttctatttcttaactgtggtggcaatcat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 tttaggagaatgctttagtgagatgaaaatgttctatttcttaactgtggtggcaatcat 786
Query: 185 gggaatgtatagattaaactcactgatgagccttttaaatgtgtacagtttatttatgta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gggaatgtatagattaaactcactgatgagccttttaaatgtgtacagtttatttatgta 726
Query: 245 gattatacttcagtaaacctgatactaaaaccattacctttctaaagtgaaggaagaaga 304
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 725 gattatacttcagtaaacctgatactaaaaccattac--ttctaaagtgaaggaagaaga 668
Query: 305 tgctgtgtggaa-----taaacgttcattccaaatgatcttggagatgatgagagccatg 359
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tgctgtatggaataaactaaacgttcattccaaatgatcttggagatgatgagagccatg 608
Query: 360 aaagctgatggggcatccaatataatccctacatttcttttctttccttttcagaattaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aaagctgatggggcatccaatataatccctacatttcttttctttccttttcagaattaa 548
Query: 420 tggatttcattatgacatttccttacatacttactttctgtactttggttgtctttgcaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tggatttcattatgacatttccttacatacttactttctgtactttggttgtctttgcaa 488
Query: 480 cccatagtcctcccatactgccagtagtagtgggtttggctaaagttgcttgtattctaa 539
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 487 cccatagtcctcccatactgccagtagtagtgggtttggctaatgttgcttgtattctaa 428
Query: 540 tgctgatttgaggcccccaaggctg 564
|||||||||||||||||||||||||
Sbjct: 427 tgctgatttgaggcccccaaggctg 403
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 967
Length adjustment: 10
Effective length of query: 554
Effective length of database: 957
Effective search space: 530178
Effective search space used: 530178
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_h10.g1 MSMg01no098_h10.g1 CHROMAT_FILE:
MSMg01no098_h10.g1 PHD_FILE: MSMg01no098_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:35 2005
(453 letters)
>mm_chr11_21531563_21532415
Length = 853
Score = 832 bits (430), Expect = 0.0
Identities = 450/462 (97%), Gaps = 9/462 (1%)
Strand = Plus / Plus
Query: 1 ctctgacccttttgttgccacccctaggtgaattcagcatcgggtcaacacctcttcaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctgacccttttgttgccacccctaggtgaattcagcatcgggtcaacacctcttcaac 260
Query: 61 ctagcctgcatccccttattgcacctcctgcaacaacagcctccaaaaaataaaatttag 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 ctagcctgcatccccttattgcacctcctgcaacaacagcctctaaaaaataaaatttag 320
Query: 121 cactagcattaatgctgtttgttgcttatcatcatgcaggatattgttatttttcttccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactagcattaatgctgtttgttgcttatcatcatgcaggatattgttatttttcttccg 380
Query: 181 tttttttttttttt---------ttttttttttggggagctccaccaaaaatgctccact 231
|||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 381 ttttttttttttttttgtttttgttttttttttgtggagctccaccaaaaatgctccact 440
Query: 232 gagcgtttctcagtggatctcccactttcaggccccatgttggacaccacctgtacctgt 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagcgtttctcagtggatctcccactttcaggccccatgttggacaccacctgtacctgt 500
Query: 292 ccagcagccatgaattaactgggttacctgaaaagggggctggaaatgaaaagggtgggg 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagcagccatgaattaactgggttacctgaaaagggggctggaaatgaaaagggtgggg 560
Query: 352 cacaagagcaggatgaagtgatcaaggctcaaagtttaataatcaccactgtgtttatat 411
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 cacaagagcaggatgaagtgatcaaggctcaaagtttaatagtcaccactgtgtttatat 620
Query: 412 agggagaggccacagaccatcctttgtttcagctggatttca 453
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agggagaggccacagaccatcctttgtttcagctggatttca 662
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space: 373449
Effective search space used: 373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
