Query= MSMg01no098_n10.b1 MSMg01no098_n10.b1 CHROMAT_FILE:
MSMg01no098_n10.b1 PHD_FILE: MSMg01no098_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:04 2005
(580 letters)
>mm_chr11_111410354_111411333
Length = 980
Score = 1029 bits (532), Expect = 0.0
Identities = 568/580 (97%)
Strand = Plus / Plus
Query: 1 tactagtattgctgatacaatttaacacatgaaaatatcaggaaattttattgttgcggc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 tactagtattgctgatacaatttaacacatgaaaatatcaggaaattttattgttgtggc 260
Query: 61 tagccctggggctaattatatttgatgttaattctgttctcctgtgaggcattgtgaaca 120
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 tagccctgcggctaattatatttgatgttaattctgttctcctgtgaggcgttgtgaaca 320
Query: 121 aagaatgagtcagcactcaggtgatttcctataaaatcatcttcccaccttaatttttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaatgagtcagcactcaggtgatttcctataaaatcatcttcccaccttaatttttaa 380
Query: 181 aataaaggagagctgatgattagacaggaaaagggaaggtggagcggaaagttgagagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataaaggagagctgatgattagacaggaaaagggaaggtggagcggaaagttgagagag 440
Query: 241 agaagaatattataatgggagagagagaggacacagaggacgaggaagaagaagaaaagc 300
||||||| | | ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 agaagaagaagaaaatgggagagagagaggacacagaggaggaggaagaagaagaaaagc 500
Query: 301 tgaacagaagcacatggcctggagaatctgcaagttctaaggggtctcatagatgtggaa 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaacagaagcacatggcgtggagaatctgcaagttctaaggggtctcatagatgtggaa 560
Query: 361 gatgttagtgtagcggtagatctgcccaatctaggcacacagcatgtattcatattagtt 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatgttagtgtagcagtagatctgcccaatctaggcacacagcatgtattcatattagtt 620
Query: 421 gagttgtattttcattgccagggcatatttgggttggagatttatcgcaatacgttatct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagttgtattttcattgccagggcatatttgggttggagatttatcgcaatacgttatct 680
Query: 481 attctggatagatttcatactagcagatttcacagaagcagatggtgctatgccagctac 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attctggatagatttcacactagcagatttcacagaagcagatggtgctatgccagctac 740
Query: 541 tgggcgaggaaagatgttagtgccatgataggatgtttgg 580
||||| ||||||||||||||||||||||||||||||||||
Sbjct: 741 tgggcaaggaaagatgttagtgccatgataggatgtttgg 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_n10.g1 MSMg01no098_n10.g1 CHROMAT_FILE:
MSMg01no098_n10.g1 PHD_FILE: MSMg01no098_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:04 2005
(283 letters)
>mm_chr11_111527135_111527816
Length = 682
Score = 455 bits (235), Expect = e-132
Identities = 271/283 (95%), Gaps = 1/283 (0%)
Strand = Plus / Minus
Query: 1 tctttagtttgtattctattcagttatatttgcctatgaggaagccggtgggggttcact 60
||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||
Sbjct: 482 tctttagtttgtattctattcagctatatttgcctatgaggaagggggtgggagttcact 423
Query: 61 gccaccatcagaaaacaaatgggtgaaaataaaatttatagttagggatgggggcttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 422 gccaccatcagaaaacaaatgggtgaaaataaaatttatagttagggataggggcttctt 363
Query: 121 gctggggtcacaatctcctcatcttcaacagcaatattgataataacacttcctaaagaa 180
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gctggggtcatgatctcctcatcttcaacagcaatattgataataacacttcctaaagaa 303
Query: 181 tcatttcataaatggatatggagagaatgatttcatgtatcctattattctaaaaccttt 240
||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||
Sbjct: 302 tcatttcataaatggatatggagagaatgatgtaatgtaccctattattctaaaaccttc 243
Query: 241 atggcttctgtgcttttttttttttcaccagaaacaataaaag 283
|||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 242 atggcttctgtgcttttttttttt-caccagaaacaataaaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 682
Length adjustment: 9
Effective length of query: 274
Effective length of database: 673
Effective search space: 184402
Effective search space used: 184402
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
