Query= MSMg01no098_n11.b1 MSMg01no098_n11.b1 CHROMAT_FILE:
MSMg01no098_n11.b1 PHD_FILE: MSMg01no098_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:04 2005
(544 letters)
>mm_chr11_115973855_115974799
Length = 945
Score = 903 bits (467), Expect = 0.0
Identities = 503/515 (97%), Gaps = 1/515 (0%)
Strand = Plus / Plus
Query: 21 cccaaaatgtcctcttaaagaaacaaataggggcaggagagctgccttggtggttaagaa 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 cccaaaatgtcctcttaaagaaacaaataggggcaggagagctgccttggtggttaagaa 280
Query: 81 catgttttgttcctgcagaggacctgagctcaatttccagcactcaacagacagctcata 140
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 catgtgttgctcctgcagaggacctgagctcaatttccagcactcaacagacagctcata 340
Query: 141 actcctcataactccagctccagggatgcctctaacctcaggcacacgcacatatataga 200
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 341 actcctcataactccagctccagggatgcctctaacctcaggcacaggcacatatacaga 400
Query: 201 catgcgcacatacgtgtacatgtgagtaaataacactactaataagacatttctaaaata 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 catgcgcacatacgtgtacatgtgagtaaataacactactaataagacatttctaaaata 460
Query: 261 aataaagcaaaataaattcctctttatataaagacacaggaaaatgagtcggggctt-gc 319
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 461 agtaaagcaaaataaattgctctttatataaagacacaggaaaatgagtcggggctttgc 520
Query: 320 cctacttcagtatgttctcattctaacttgattatgatcgccaaggctctatttctaaat 379
|||||| ||||||||||||||||||||||||||||||||||||| || ||||||| ||||
Sbjct: 521 cctactccagtatgttctcattctaacttgattatgatcgccaaagccctatttccaaat 580
Query: 380 aatgttgcaggcccaggcttgagggctgggacctgaacatattattaatggaggcccatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aatgttgcaggcccaggcttgagggctgggacctgaacatattattaatggaggcccatg 640
Query: 440 aagctgtgcacctgaggaaaagtgtagagccatccctcagagcagtggcaccagaggtgg 499
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 atgctgtgcacctgaggaaaagtgtagagccatccctcagagcagtggcaccagaggtgg 700
Query: 500 ccattcatgtctctcctaggttcccaactctctct 534
|||||||||||||||||||||||||||||||||||
Sbjct: 701 ccattcatgtctctcctaggttcccaactctctct 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 945
Length adjustment: 10
Effective length of query: 534
Effective length of database: 935
Effective search space: 499290
Effective search space used: 499290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_n11.g1 MSMg01no098_n11.g1 CHROMAT_FILE:
MSMg01no098_n11.g1 PHD_FILE: MSMg01no098_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:04 2005
(334 letters)
>mm_chr11_116112784_116113519
Length = 736
Score = 569 bits (294), Expect = e-166
Identities = 325/336 (96%), Gaps = 2/336 (0%)
Strand = Plus / Minus
Query: 1 cacctgcaagcttccgagtgagagagaccagggtctgcctgcttcctctgagcgagcgag 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 cacctgcaagcctccgagtgagagagaccagggtctgcctgcttcctctgagcgagcgag 477
Query: 61 cactggataccctgtctgctcggtggccgattcgctctcccctgcgtttgctgccactgc 120
||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 476 cactggacaccctgtctgctcagtggccgattcgctctcccctgtgtttgctgccactgc 417
Query: 121 tgtacttgtgcagtaacacagtagttgtcttccccggggctctgtgcttgtgtgcccact 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 416 tgtacttgtgcagtaacacagtagttgtcttccctggggctctgtgcttgtgtgcccact 357
Query: 181 tgccaccagacacacgcactcatacac--tcctcccttgtcacacttggtgtccattctt 238
|||||||||||||||||||||| |||| ||| |||||||| ||||||||||||||||||
Sbjct: 356 tgccaccagacacacgcactcacacacactccgcccttgtcccacttggtgtccattctt 297
Query: 239 ggggttttggtattagtggatgtcagactgactgacagatgactcgggtccttggcatat 298
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gggggtttggtattagtggatgtcagactgactgacagatgactcgggtccttggcatat 237
Query: 299 cgtacagggttcgccatagatgttatctgtttagtc 334
||||||||||||||||||||||||||||||||||||
Sbjct: 236 cgtacagggttcgccatagatgttatctgtttagtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 736
Length adjustment: 9
Effective length of query: 325
Effective length of database: 727
Effective search space: 236275
Effective search space used: 236275
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
