BAC Information

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BAC

Clone NameMSMg01-098O22
Chromosome11 (Build37)
Map Location 34,587,079 - 34,742,944
singlet/doubletdoublet
Overlap geneDock2, Ccdc99, LOC100038976
Upstream geneKcnip1, Kcnmb1, Lcp2, Foxi1, Dock2, EG574403
Downstream geneSlit3, LOC100039006, Pank3, LOC666733, AI595406, Rars, Wwc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098O22.T7 (MSMg01no098_o22.b1)MSMg01-098O22.TJ (MSMg01no098_o22.g1)
ACCAG314987AG314988
length664706
length of high quality
(start - end)
288 (19 - 306)244 (55 - 298)
definitionCHROMAT_FILE: MSMg01no098_o22.b1 PHD_FILE: MSMg01no098_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:11 2005CHROMAT_FILE: MSMg01no098_o22.g1 PHD_FILE: MSMg01no098_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,742,657 - 34,742,944)(34,587,079 - 34,587,322)
sequence
TGCTTTTCANATATTCCAAGGATTCCATAAATCAAGAAAAAAAGTATCTC
AAAATAAAGTATTCGCCCTGTCTCTACGAGAACCAGGCGTACAAGCCAGG
TGTACAGTATGCTGTACAGTGATGAAGTGAGCTGTAAAAGTTTCCCTTGG
GGACGTATCATTTATTATCTGTTATCATCAGATAAAGGGGGAAACGTGAT
AAGAATAACAGAACCCAGATGTTAAGAAAATATATGCCAAGTAAAAATTT
TAAGCATGTGTATTGTAGATTTGGGGCTCTGAAGATTCTATTTATTGATG
ATGATCTTGAATCACCCTCGCATGAATTTTCAGAAGCCATATAAGAGTGA
AGACTTACTTTTCTATGTGTGAAGCATCTGCTGGAATCTGTGTCTAGACT
TAGCAGTCCATGAGCTTGCTCTTTTATCTGCAACTCAGATTCATGGAGTA
CTAGAAGCTGTACAAAACAAAGTACAAGCTAGAGCTAATTGGGTTTCAAA
AGCTTTAAATATTGTGCCTCTGTGTGGGCATGTGCACATGAATTCTGATG
ACCACTGAAATCAGAAACAGGGCATTGCATCTTCTTGATCTGGAGGTACA
GGCAGTTGCGAGCTGCCTGACCTGTTTGCTCCCAATGAATCTCAATCCTC
TACCAGACTGGTGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTCAGGTCAGAGGACTAAATGGCTCTTGTTCTCTGGAACCCTCTGA
CATCTGGTAGCAGAGTCACACAAAAGAGAAACAAGGAGCAGCCTGAACTC
TGTGGTGCCAAGTTGCCGGGCACAGCAGCTGTGGCCTCTCAGAGAGCTAG
AAAGGTCCTGTGAGGGAAGTGAGACTAGAAGGAGAGGGTGGAGAAGAGCG
GGGGTGGGGGCCAAGGAGCAGAAGAAGAGCAGTGGGAGGGGTGGGAAGTG
TGGGGAGTCTCCCTTTCCTCTTCTTTTTTTTTCTCTTTTTTTCCCCCCCC
CCCCCCCCTCCCTTCCTTTTTCCTCCTCTTTTCTTTCCCCCCCCATTCAC
AAATACATTACTCTCGGCGGGCGGTTCTTCCTCACCTTTTTTCTTCCTCC
TTCTTCTCTTTCTTCTCCTTTCCCCTCCCTTCCCTTTCCCCCCCCCCCTC
TCCCTTTTCATTCCTCTCCCCTCTCTTCTTTTTTCTTCTCTTCTTTACCC
TTCTCACCTCCCCTCCCCTTCTATTCCACACTTCATGCCGGTGCAATTGT
TCCCTCTCCCCCACCTTCCTTTCTTTTTTTTTCCTGTCCTCCCTTCCTTC
CCTTCCCTTCTTTTTTCTCTTCTTTTCTCTTTTCTCCCCCTTCCCCCCCT
TTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_o22.b1 MSMg01no098_o22.b1 CHROMAT_FILE:
MSMg01no098_o22.b1 PHD_FILE: MSMg01no098_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:11 2005
         (288 letters)



>mm_chr11_34742457_34743144
          Length = 688

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggattccataaatcaagaaaaaaagtatctcaaaataaagtattcgccctgtctctacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
Sbjct: 488 aggattccataaatcaagaaaaaaagtatctcaaaataaagtattcgacgtgtctctatg 429

                                                                       
Query: 61  agaaccaggcgtacaagccaggtgtacagtatgctgtacagtgatgaagtgagctgtaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 agaaccaggcgtacaagccaggtgtacagtatgctgtacagtgatgaagtgagctgtaaa 369

                                                                       
Query: 121 agtttcccttggggacgtatcatttattatctgttatcatcagataaagggggaaacgtg 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 agtctcccttggggacgtatcatttattatctgttatcatcagataaagggggaaacgtg 309

                                                                       
Query: 181 ataagaataacagaacccagatgttaagaaaatatatgccaagtaaaaattttaagcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ataagaataacagaacccagatgttaagaaaatatatgccaagtaaaaattttaagcatg 249

                                                           
Query: 241 tgtattgtagatttggggctctgaagattctatttattgatgatgatc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgtattgtagatttggggctctgaagattctatttattgatgatgatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no098_o22.g1 MSMg01no098_o22.g1 CHROMAT_FILE:
MSMg01no098_o22.g1 PHD_FILE: MSMg01no098_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:11 2005
         (244 letters)



>mm_chr11_34586879_34587522
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcaggtcagaggactaaatggctcttgttctctggaaccctctgacatctggtagcaga 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 ttcaggtcagaggactaaatggctcttgttctctggaaccctctgaaatctggtagcaga 260

                                                                       
Query: 61  gtcacacaaaagagaaacaaggagcagcctgaactctgtggtgccaagttgccgggcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcacacaaaagagaaacaaggagcagcctgaactctgtggtgccaagttgccgggcaca 320

                                                                       
Query: 121 gcagctgtggcctctcagagagctagaaaggtcctgtgagggaagtgagactagaaggag 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gcagctgtggcctctcagagagctagaaaggtcctgtgaaggaagtgagactagaaggag 380

                                                                       
Query: 181 agggtggagaagagcgggggtgggggccaaggagcagaagaagagcagtgggaggggtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggtggagaagagcgggggtgggggccaaggagcagaagaagagcagtgggaggggtgg 440

               
Query: 241 gaag 244
           ||||
Sbjct: 441 gaag 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)